The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR9
  5. pfr-miR9e

Accession: B52937107

Entry

ID: pfr-miR9e
Alias: F54283.N000104.A25
Sequence: UCUUUGGUUAUCUAGCUGUAUGA
Description: mir-9/mir-79 microRNA precursor family predicted,partially
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1) 紫苏叶(1) 紫苏梗(1) 紫苏(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR9; Bjl-miR9h; Bsr-miR9b; Bswzz-miR9d; aar-miR9; acr-miR9d; act-miR9b; aeu-miR9b; amc-miR9; apl-miR9b; ath-miR9b; bca-miR9e; bhi-miR9b; car-miR9; cas-miR9b; cba-miR9c; cci-miR9b; ccs-miR9b; cfe-miR9g; cid-miR9b; cit-miR9h; cmd-miR9j; cmo-miR9b; cof-miR9i; cpe-miR9; csp-miR9c; csu-miR9f; efo-miR9b; esn-miR9; fmu-miR9b; fsu-miR9e; gbi-miR9b; hcr-miR9d; hof-miR9b; ija-miR9b; lba-miR9f; lcr-miR9b; ljc-miR9e; lji-miR9b; ljn-miR9b; ljo-miR9e; ljp-miR9; llc-miR9b; llu-miR9e; mal-miR9d; nja-miR9b; nsc-miR9b; ofi-miR9b; pas-miR9b; pch-miR9; pcn-miR9; pfr-miR9e; poe-miR9c; ppr-miR9e; pvl-miR9f; rcr-miR9e; run-miR9b; sar-miR9; sba-miR9c; sgi-miR9c; sjp-miR9b; sor-miR9g; tci-miR9b; tfa-miR9c; tki-miR9k; tmo-miR9c; twi-miR9b; vtr-miR9b; zof-miR9f;

Rfam Alignments

>> mir-9  mir-9/mir-79 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00037   24.5   0.0  cm        2       24 ~~           1          23 + ~~ 1.00 5'&3' 0.35
                                                             ???????????????  ????       NC
                                                      ~~~~~::<<<<<<<<<<<<<<<--<<<<~~~~~~ CS
                                             mir-9  1 <[1]*UCUUuGGUuaucUAGCUGUAUGA*[38]> 62
                                                           UCUUUGGUUAUCUAGCUGUAUGA
                                         zof-miR9f  1 <[0]*UCUUUGGUUAUCUAGCUGUAUGA*[ 0]> 23
                                                      .....***********************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR