The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR26
  5. pfr-miR26c

Accession: B52714047

Entry

ID: pfr-miR26c
Alias: F2227.M000037.A25
Sequence: UUCAAGUAAUCCAGGAUAGGCU
Description: mir-26 microRNA precursor family predicted,partially
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1) 紫苏叶(1) 紫苏梗(1) 紫苏(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR26; Bjl-miR26ac; Bswzz-miR26c; aar-miR26; acn-miR26; acr-miR26c; act-miR26b; agr-miR26; ala-miR26; apa-miR26; asc-miR26c; bca-miR26ac; bch-miR26a; bci-miR26a; bhi-miR26b; bpi-miR26a; car-miR26c; cas-miR26b; cba-miR26b; cci-miR26c; ccs-miR26; cde-miR26a; cfe-miR26c; cid-miR26; cit-miR26ad; cma-miR26; cmd-miR26ac; cmi-miR26a; cmj-miR26c; cmo-miR26; cof-miR26c; cpe-miR26; cph-miR26; cri-miR26b; cso-miR26a; csp-miR26c; csu-miR26c; cya-miR26b; ehu-miR26c; eja-miR26a; epr-miR26c; esn-miR26c; fmu-miR26c; fsu-miR26a; fth-miR26; gbi-miR26; gel-miR26c; gja-miR26; gpe-miR26a; hcr-miR26ac; hof-miR26b; hvu-miR26; ili-miR26; kga-miR26c; lba-miR26b; lch-miR26c; lcr-miR26b; lgr-miR26a; ljc-miR26c; lji-miR26b; ljn-miR26a; ljo-miR26a; ljp-miR26c; lln-miR26b; llu-miR26c; mal-miR26c; mco-miR26; mda-miR26; mpu-miR26a; nnu-miR26c; nte-miR26c; pav-miR26; pcl-miR26; pcn-miR26; pfr-miR26c; pgi-miR26; poe-miR26ac; ppo-miR26; ppr-miR26c; psu-miR26b; pvl-miR26a; rcr-miR26; run-miR26a; sad-miR26; sar-miR26b; sba-miR26; sbc-miR26a; sca-miR26b; sch-miR26b; sdf-miR26c; sdi-miR26c; sgi-miR26c; sln-miR26c; smi-miR26a; sor-miR26ac; ssa-miR26; ssu-miR26b; tch-miR26b; tfa-miR26c; tja-miR26; tki-miR26c; tmo-miR26a; vph-miR26a; zof-miR26c;

Rfam Alignments

>> mir-26  mir-26 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00043   21.7   0.0  cm        9       30 ~~           1          22 + ~~ 1.00 5'&3' 0.41
                                                             ????????? ?????????        NC
                                                      ~~~~~::<<<<<<<<<-<<<<<<<<<_~~~~~~ CS
                                            mir-26  1 <[8]*UUCAAGUAAucCAGgAuAGGCU*[44]> 74
                                                           UUCAAGUAAUCCAGGAUAGGCU
                                        zof-miR26c  1 <[0]*UUCAAGUAAUCCAGGAUAGGCU*[ 0]> 22
                                                      .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001123363 ;   NM_001164463 ;   NM_001351397 ;   NM_001351398 ;   NM_001351399 ;   NM_001351400 ;   NM_001351401 ;   NM_001351402 ;   NM_001351403 ;   NM_001351404 ;   NM_001351405 ;   NM_001351406 ;   NM_001351407 ;   NM_001351408 ;   NM_001351409 ;   NM_001351410 ;   NM_001351411 ;   NM_001351412 ;   NM_001351413 ;   NM_001351414 ;   NM_001351415 ;   NM_001351416 ;   NM_001351417 ;   NM_001351418 ;   NM_001351419 ;   NM_001351420 ;   NM_001401 ;   NM_005054 ;   NM_057159 ;   NM_181453 ;   NR_028063 ;  

Predicted by TAPIR