The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. pfr-miR1b

Accession: B52549545

Entry

ID: pfr-miR1b
Alias: F574.M000061.A25
Sequence: UGGAAUGUAAAGAAGUAUGUAC
Description: mir-1 microRNA precursor family predicted,partially
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1) 紫苏叶(1) 紫苏(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1c; Bswzz-miR1d; aar-miR1c; acn-miR1a; acr-miR1d; act-miR1b; agr-miR1a; asc-miR1a; bca-miR1c; bch-miR1a; bci-miR1a; bhi-miR1b; bpi-miR1b; car-miR1a; cba-miR1c; cci-miR1c; cde-miR1b; cfe-miR1b; cga-miR1a; cid-miR1a; cit-miR1ae; cmd-miR1ae; cmi-miR1a; cmj-miR1a; cmo-miR1b; cof-miR1b; cri-miR1c; csm-miR1a; cso-miR1b; csp-miR1c; csu-miR1d; cya-miR1a; ehu-miR1b; eja-miR1a; epr-miR1a; esn-miR1b; est-miR1a; fmu-miR1c; fsu-miR1a; fth-miR1b; gel-miR1b; hcr-miR1ac; hof-miR1b; lch-miR1a; lcr-miR1b; lgr-miR1c; lji-miR1c; ljp-miR1c; lln-miR1a; llu-miR1c; mal-miR1a; nnu-miR1c; nte-miR1a; pcl-miR1a; pfr-miR1b; pgi-miR1b; pmu-miR1a; poe-miR1ae; ppo-miR1a; ppr-miR1b; psu-miR1a; pvl-miR1b; sad-miR1c; sar-miR1c; sba-miR1c; sch-miR1c; sdf-miR1c; sdi-miR1c; sgi-miR1a; sln-miR1a; sor-miR1ae; spa-miR1c; sse-miR1b; tch-miR1ad; tfa-miR1c; tja-miR1a; tki-miR1c; vph-miR1b; zof-miR1c;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0042   20.6   0.0  cm       49       69 ~.           1          21 + ~. 1.00    5' 0.29
                                                             ??? ????????????????? NC
                                                       ~~~~~~>>>->>>>>>>>>>>>>>>>> CS
                                              mir-1  9 <[40]*UGGAAUgUAAaGAAGuAUGua 69
                                                             UGGAAUGUAAAGAAGUAUGUA
                                          zof-miR1c  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUA 21
                                                       ......********************* PP

Targets

Predicted by TargetFinder

NM_001143957 ;   NM_001365767 ;   NM_005562 ;   NM_030784 ;   NR_103535 ;  

Predicted by TAPIR

NM_005562 ;   NR_103535 ;