The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. pfr-miR10c

Accession: B52826927

Entry

ID: pfr-miR10c
Alias: F8347.N000091.A25
Sequence: UACCCUGUAGAUCCGAAUUUGUG
Description: mir-10 microRNA precursor family predicted,partially
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1) 紫苏梗(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10ag; bca-miR10f; bch-miR10e; bpi-miR10c; cba-miR10d; cfe-miR10af; cit-miR10ai; cmd-miR10ag; cof-miR10c; csp-miR10e; esn-miR10f; fmu-miR10c; fsu-miR10d; gel-miR10e; hcr-miR10f; kga-miR10c; ljn-miR10e; pfr-miR10c; poe-miR10ag; ppr-miR10f; pvl-miR10f; sar-miR10b; sgi-miR10f; sor-miR10ah; tki-miR10f; tmo-miR10d; vph-miR10e; zof-miR10d;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00013   23.0   0.0  cm        8       30 ~~           1          23 + ~~ 1.00 5'&3' 0.43
                                                              ???   ???????????????       NC
                                                       ~~~~~--<<<---<<<<<<<<<<<<<<<~~~~~~ CS
                                             mir-10  1 <[7]*UACCCUGUAGAucCGAacuUGUG*[45]> 75
                                                            UACCCUGUAGAUCCGAA UUGUG
                                         zof-miR10d  1 <[0]*UACCCUGUAGAUCCGAAUUUGUG*[ 0]> 23
                                                       .....***********************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR