The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. pfr-miR166ae

Accession: B52215688

Entry

ID: pfr-miR166ae
Alias: F2.M000061.A11*
Sequence: UCGGACCAGGCUUCAUUCCCCA
Description: mir-166 microRNA precursor predicted,partially
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1) 紫苏叶(1) 紫苏梗(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bsr-miR166b; ade-miR166b; aha-miR166b; ala-miR166b; apl-miR166b; ath-miR166b; bmj-miR166b; car-miR166b; cci-miR166b; cco-miR166ac; ccs-miR166ac; cfe-miR166b; cit-miR166b; cja-miR166b; cmd-miR166b; cmj-miR166b; cof-miR166ad; cpe-miR166b; cso-miR166b; csp-miR166c; dlo-miR166b; dst-miR166c; eja-miR166b; epr-miR166ab; est-miR166b; fmu-miR166b; gbi-miR166ad; gja-miR166b; gma-miR166b; gmc-miR166b; gsi-miR166b; hmu-miR166b; hof-miR166b; iba-miR166b; ini-miR166b; lfo-miR166b; ljc-miR166b; ljp-miR166b; llc-miR166b; llu-miR166b; lpu-miR166ab; mal-miR166b; mca-miR166ac; mch-miR166b; nca-miR166b; nnu-miR166ab; nte-miR166b; pav-miR166b; pcl-miR166c; pcn-miR166b; pfr-miR166ae; poe-miR166b; por-miR166b; ptn-miR166b; rch-miR166ab; rja-miR166b; rte-miR166b; sch-miR166c; sdf-miR166b; sdi-miR166b; sgl-miR166b; sor-miR166b; ssa-miR166b; sse-miR166b; ssu-miR166b; tci-miR166b; vof-miR166b;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   6.1e-05   24.1   0.0  cm      101      121 ~.           1          21 + ~. 1.00    5' 0.62
                               ???  ??????  ???????? NC
                         ~~~~~~>>>-->>>>>>-->>>>>>>> CS
             mir-166   6 <[95]*UCGGACCAGGCUUCAUUCCcC 121
                               UCGGACCAGGCUUCAUUCCCC
         vof-miR166b   1 <[ 0]*UCGGACCAGGCUUCAUUCCCC 21
                         ......********************* PP

Targets

Predicted by TargetFinder

NM_015221 ;   NR_148968 ;  

Predicted by TAPIR

NM_015221 ;   NR_148968 ;