The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. pfr-miR159s

Accession: B52929474

Entry

ID: pfr-miR159s
Alias: F45689.J000003.A25
Sequence: UUGGAUUGAAGGGAGCUCU
Description: microRNA MIR159 predicted
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1) 紫苏叶(1) 紫苏梗(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR159p; Bsr-miR159n; aan-miR159m; abi-miR159h; acr-miR159k; aha-miR159x; ala-miR159r; apl-miR159bx; ave-miR159t; bca-miR159r; bch-miR159c; bmj-miR159s; cco-miR159bu; ccs-miR159bh; cde-miR159c; cit-miR159k; cmo-miR159p; cof-miR159t; cor-miR159c; csm-miR159k; cso-miR159s; csp-miR159as; csu-miR159j; dst-miR159v; ehu-miR159m; epr-miR159i; fsu-miR159i; gbi-miR159w; gli-miR159e; gma-miR159bg; gmc-miR159p; gpe-miR159i; gsi-miR159l; hcr-miR159o; hmu-miR159h; ija-miR159g; ili-miR159j; ini-miR159q; lfo-miR159s; ljn-miR159h; llc-miR159p; lpu-miR159co; mca-miR159ay; mch-miR159d; nca-miR159h; nja-miR159f; nnu-miR159bl; nte-miR159l; pav-miR159bc; pcl-miR159j; pcn-miR159p; pfr-miR159s; pmu-miR159i; poe-miR159i; por-miR159br; psu-miR159ba; pvl-miR159az; rch-miR159ba; rcr-miR159bi; rja-miR159be; rte-miR159i; sba-miR159h; sbc-miR159m; smi-miR159ay; sto-miR159bd; tci-miR159m; tmo-miR159h; twi-miR159n; vof-miR159l; vum-miR159q;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0026   18.3   0.0  cm      165      183 ~~           1          19 + ~~ 1.00 5'&3' 0.47
                                                                   ???????  ????????        NC
                                                           ~~~~~~~->>>>>>>-->>>>>>>>:~~~~~~ CS
                                                MIR159   1 <[164]*UUGGAcuGAAGGGAGCUCC*[13]> 196
                                                                  UUGGA UGAAGGGAGCUC+
                                           vum-miR159q   1 <[  0]*UUGGAUUGAAGGGAGCUCU*[ 0]> 19
                                                           .......*******************...... PP

Targets

Predicted by TargetFinder

NM_000506 ;   NM_001001659 ;   NM_001024455 ;   NM_001025356 ;   NM_001042762 ;   NM_001079516 ;   NM_001080534 ;   NM_001142678 ;   NM_001142679 ;   NM_001143974 ;   NM_001167671 ;   NM_001167672 ;   NM_001171740 ;   NM_001171741 ;   NM_001195272 ;   NM_001204803 ;   NM_001242412 ;   NM_001244580 ;   NM_001267556 ;   NM_001267558 ;   NM_001267559 ;   NM_001271634 ;   NM_001287492 ;   NM_001287493 ;   NM_001287494 ;   NM_001287495 ;   NM_001287496 ;   NM_001300860 ;   NM_001311257 ;   NM_001321920 ;   NM_001321922 ;   NM_001321923 ;   NM_001321957 ;   NM_001321958 ;   NM_001321959 ;   NM_001321960 ;   NM_001329919 ;   NM_001346558 ;   NM_001346559 ;   NM_001346560 ;   NM_001346561 ;   NM_001346562 ;   NM_001346563 ;   NM_001346564 ;   NM_001346565 ;   NM_001367580 ;   NM_001367581 ;   NM_001367582 ;   NM_003496 ;   NM_004227 ;   NM_005185 ;   NM_005444 ;   NM_005578 ;   NM_013232 ;   NM_014829 ;   NM_014906 ;   NM_016210 ;   NM_017583 ;   NM_019893 ;   NM_020447 ;   NM_020731 ;   NM_022116 ;   NM_138694 ;   NM_170724 ;   NR_002227 ;   NR_003713 ;   NR_048561 ;   NR_073390 ;   NR_105002 ;   NR_109833 ;   NR_110763 ;   NR_125341 ;   NR_135841 ;   NR_135842 ;   NR_135843 ;   NR_135844 ;   NR_135845 ;   NR_135846 ;   NR_135847 ;   NR_135848 ;   NR_135849 ;   NR_135850 ;   NR_135851 ;   NR_135852 ;   NR_135853 ;   NR_135854 ;   NR_135904 ;   NR_146089 ;   NR_161333 ;  

Predicted by TAPIR

NM_001024455 ;   NM_001025356 ;   NM_001042762 ;   NM_001079515 ;   NM_001080534 ;   NM_001130072 ;   NM_001142678 ;   NM_001142679 ;   NM_001170629 ;   NM_001171740 ;   NM_001171741 ;   NM_001195272 ;   NM_001204803 ;   NM_001242412 ;   NM_001267556 ;   NM_001267558 ;   NM_001267559 ;   NM_001271634 ;   NM_001287492 ;   NM_001287493 ;   NM_001287494 ;   NM_001287495 ;   NM_001287496 ;   NM_001287801 ;   NM_001300860 ;   NM_001311257 ;   NM_001321920 ;   NM_001321922 ;   NM_001321923 ;   NM_001329919 ;   NM_001346558 ;   NM_001346559 ;   NM_001346560 ;   NM_001346561 ;   NM_001346562 ;   NM_001346563 ;   NM_001346564 ;   NM_001346565 ;   NM_001354208 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_003193 ;   NM_003967 ;   NM_005444 ;   NM_013232 ;   NM_014829 ;   NM_014906 ;   NM_015710 ;   NM_016210 ;   NM_017583 ;   NM_020447 ;   NM_020731 ;   NM_020920 ;   NM_022116 ;   NM_031912 ;   NM_054107 ;   NM_138694 ;   NM_139265 ;   NM_170724 ;   NM_173808 ;   NM_181519 ;   NR_003713 ;   NR_047519 ;   NR_047521 ;   NR_047523 ;   NR_047524 ;   NR_047525 ;   NR_048561 ;   NR_073390 ;   NR_105002 ;   NR_109833 ;   NR_110763 ;   NR_125341 ;   NR_135841 ;   NR_135842 ;   NR_135843 ;   NR_135844 ;   NR_135845 ;   NR_135846 ;   NR_135847 ;   NR_135848 ;   NR_135849 ;   NR_135850 ;   NR_135851 ;   NR_135852 ;   NR_135853 ;   NR_135854 ;   NR_146089 ;