The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR146
  5. pfr-miR146f

Accession: B52861826

Entry

ID: pfr-miR146f
Alias: F13220.M000058.A25
Sequence: UGAGAACUGAAUUCCAUGGGUU
Description: microRNA mir-146 predicted
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1) 紫苏梗(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR146n; Bswzz-miR146b; asc-miR146g; bca-miR146h; bhi-miR146f; cas-miR146e; cba-miR146b; cci-miR146b; cfe-miR146o; cit-miR146n; cmd-miR146o; cof-miR146g; cri-miR146; cya-miR146b; ehu-miR146b; esn-miR146b; fmu-miR146e; gel-miR146c; hcr-miR146f; kga-miR146b; ljc-miR146; lji-miR146; ljp-miR146; llu-miR146b; nte-miR146; pfr-miR146f; poe-miR146l; ppr-miR146g; sar-miR146a; sca-miR146b; sdf-miR146b; sgi-miR146f; sor-miR146l; tch-miR146c; tki-miR146g; vph-miR146c; zof-miR146e;

Rfam Alignments

>> mir-146  microRNA mir-146
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00055   22.6   0.0  cm       16       37 ~~           1          22 + ~~ 1.00 5'&3' 0.41
                                                               ????????       ????        NC
                                                       ~~~~~~--<<<<<<<<-------<<<<_~~~~~~ CS
                                            mir-146  1 <[15]*UGAGAACUGAAUUCCAUgGgcU*[53]> 90
                                                             UGAGAACUGAAUUCCAUGGG U
                                        zof-miR146e  1 <[ 0]*UGAGAACUGAAUUCCAUGGGUU*[ 0]> 22
                                                       ......**********************...... PP

Targets

Predicted by TargetFinder

NM_001286526 ;   NM_001354045 ;   NM_001354431 ;   NM_001354432 ;   NM_001365596 ;   NM_001365597 ;   NM_001365598 ;   NM_001365599 ;   NM_001365600 ;   NM_001365601 ;   NM_001365602 ;   NM_001365603 ;   NM_001365604 ;   NM_001365605 ;   NM_017892 ;   NM_207363 ;  

Predicted by TAPIR

NM_001185039 ;   NM_004035 ;   NM_007292 ;   NM_207363 ;