The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR146
  5. pfr-miR146a

Accession: B52834835

Entry

ID: pfr-miR146a
Alias: F9241.L000009.A25
Sequence: UGAGAACUGAAUUCCAUGGGU
Description: microRNA mir-146 predicted
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR146b; asc-miR146a; bca-miR146b; bhi-miR146a; cas-miR146a; cfe-miR146b; cit-miR146a; cmd-miR146a; fmu-miR146a; hcr-miR146a; pfr-miR146a; poe-miR146a; ppr-miR146a; sgi-miR146a; sor-miR146a; tki-miR146a; zof-miR146a;

Rfam Alignments

>> mir-146  microRNA mir-146
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.001   21.6   0.0  cm       16       36 ~~           1          21 + ~~ 1.00 5'&3' 0.43
                                                                  ????????       ????       NC
                                                          ~~~~~~--<<<<<<<<-------<<<<~~~~~~ CS
                                               mir-146  1 <[15]*UGAGAACUGAAUUCCAUgGgc*[54]> 90
                                                                UGAGAACUGAAUUCCAUGGG
                                           zof-miR146a  1 <[ 0]*UGAGAACUGAAUUCCAUGGGU*[ 0]> 21
                                                          ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001198950 ;   NM_001286526 ;   NM_001354045 ;   NM_001354431 ;   NM_001354432 ;   NM_001365596 ;   NM_001365597 ;   NM_001365598 ;   NM_001365599 ;   NM_001365600 ;   NM_001365601 ;   NM_001365602 ;   NM_001365603 ;   NM_001365604 ;   NM_001365605 ;   NM_015011 ;   NM_017892 ;   NM_207363 ;  

Predicted by TAPIR

NM_001185039 ;   NM_001358312 ;   NM_004035 ;   NM_007137 ;   NM_007292 ;   NM_024690 ;   NM_032167 ;   NM_207363 ;