The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR122
  5. pcn-miR122c

Accession: B52124178

Entry

ID: pcn-miR122c
Alias: F1789.P000017.A11
Sequence: UGGAGUGUGACAAUGGUGUUUGUUU
Description: mir-122 microRNA precursor predicted,partially
Species: 委陵菜  Species latin name: Potentilla chinensis
TCM Name: Weilingcai(委陵菜)  
TCM Resource (Sample number): 委陵菜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR122e; car-miR122d; cmd-miR122e; csp-miR122c; fmu-miR122d; ljc-miR122d; pcn-miR122c; ppr-miR122d;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0017   20.8   0.0  cm        9       33 ~~           1          25 + ~~ 1.00 5'&3' 0.40
                              ?  ??????? ???????????          NC
                         ~~~~~<--<<<<<<<-<<<<<<<<<<<___~~~~~~ CS
              mir-122  1 <[8]*UGGAGUGUGACaAUGGuGUUUGUgU*[41]> 74
                              UGGAGUGUGACAAUGGUGUUUGU U
          ppr-miR122d  1 <[0]*UGGAGUGUGACAAUGGUGUUUGUUU*[ 0]> 25
                         .....*************************...... PP

Targets

Predicted by TargetFinder

NR_039899 ;  

Predicted by TAPIR

NR_039899 ;