The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR164
  5. pav-miR164c

Accession: B50675690

Entry

ID: pav-miR164c
Alias: F57750.J000002.A25
Sequence: UGGAGAAGCAGGGCACGUG
Description: microRNA MIR164 predicted
Species: 萹蓄  Species latin name: Polygonum aviculare
TCM Name: Bianxu(萹蓄)  
TCM Resource (Sample number): 萹蓄(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

apl-miR164c; cmd-miR164c; csu-miR164c; gbi-miR164b; lfo-miR164e; llc-miR164b; llu-miR164; mca-miR164b; nca-miR164c; nte-miR164c; pav-miR164c; rch-miR164c; rja-miR164b; smi-miR164c; twi-miR164c;

Rfam Alignments

>> MIR164  microRNA MIR164
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00052   19.8   0.0  cm       11       29 ~~           1          19 + ~~ 1.00 5'&3' 0.63
                                                                ????????  ?????????       NC
                                                          ~~~~~~<<<<<<<<--<<<<<<<<<~~~~~~ CS
                                                MIR164  1 <[10]*UGGaGAAGCAGgGCACgUG*[80]> 109
                                                                UGGAGAAGCAGGGCACGUG
                                           twi-miR164c  1 <[ 0]*UGGAGAAGCAGGGCACGUG*[ 0]> 19
                                                          ......*******************...... PP

Targets

Predicted by TargetFinder

NM_000168 ;   NM_000195 ;   NM_000603 ;   NM_000620 ;   NM_001003683 ;   NM_001004360 ;   NM_001017969 ;   NM_001024736 ;   NM_001025200 ;   NM_001029884 ;   NM_001033521 ;   NM_001033522 ;   NM_001077503 ;   NM_001077504 ;   NM_001077505 ;   NM_001077506 ;   NM_001098536 ;   NM_001104 ;   NM_001105237 ;   NM_001127244 ;   NM_001127245 ;   NM_001128631 ;   NM_001130420 ;   NM_001136537 ;   NM_001137673 ;   NM_001145044 ;   NM_001145306 ;   NM_001145453 ;   NM_001145536 ;   NM_001146189 ;   NM_001146190 ;   NM_001164326 ;   NM_001172655 ;   NM_001181 ;   NM_001184785 ;   NM_001184786 ;   NM_001184787 ;   NM_001184788 ;   NM_001184789 ;   NM_001184790 ;   NM_001184791 ;   NM_001184879 ;   NM_001184881 ;   NM_001184882 ;   NM_001190467 ;   NM_001191323 ;   NM_001193397 ;   NM_001201352 ;   NM_001204213 ;   NM_001204214 ;   NM_001204218 ;   NM_001206984 ;   NM_001257328 ;   NM_001257329 ;   NM_001257330 ;   NM_001257331 ;   NM_001258312 ;   NM_001258313 ;   NM_001258314 ;   NM_001258371 ;   NM_001259 ;   NM_001261835 ;   NM_001271832 ;   NM_001276471 ;   NM_001277198 ;   NM_001277199 ;   NM_001277200 ;   NM_001282161 ;   NM_001282396 ;   NM_001282397 ;   NM_001286057 ;   NM_001288654 ;   NM_001288655 ;   NM_001288800 ;   NM_001291088 ;   NM_001300961 ;   NM_001300962 ;   NM_001300966 ;   NM_001302705 ;   NM_001307990 ;   NM_001308160 ;   NM_001311345 ;   NM_001318503 ;   NM_001321326 ;   NM_001321906 ;   NM_001321909 ;   NM_001322033 ;   NM_001322476 ;   NM_001322477 ;   NM_001322478 ;   NM_001322479 ;   NM_001322480 ;   NM_001322481 ;   NM_001322482 ;   NM_001322483 ;   NM_001322484 ;   NM_001322485 ;   NM_001322487 ;   NM_001322489 ;   NM_001322490 ;   NM_001322491 ;   NM_001322492 ;   NM_001324 ;   NM_001324375 ;   NM_001329190 ;   NM_001329628 ;   NM_001329629 ;   NM_001329798 ;   NM_001329799 ;   NM_001329800 ;   NM_001329801 ;   NM_001329802 ;   NM_001329803 ;   NM_001329804 ;   NM_001329805 ;   NM_001329806 ;   NM_001329938 ;   NM_001329939 ;   NM_001330064 ;   NM_001330288 ;   NM_001330742 ;   NM_001348096 ;   NM_001348098 ;   NM_001348099 ;   NM_001354435 ;   NM_001363734 ;   NM_001363871 ;   NM_001365116 ;   NM_001368719 ;   NM_001395 ;   NM_001756 ;   NM_001906 ;   NM_001961 ;   NM_002039 ;   NM_002245 ;   NM_003075 ;   NM_003239 ;   NM_003336 ;   NM_003481 ;   NM_003591 ;   NM_003724 ;   NM_003874 ;   NM_004274 ;   NM_004313 ;   NM_004370 ;   NM_004516 ;   NM_004579 ;   NM_004758 ;   NM_004978 ;   NM_005019 ;   NM_005264 ;   NM_005559 ;   NM_006454 ;   NM_006696 ;   NM_006790 ;   NM_006807 ;   NM_007045 ;   NM_012090 ;   NM_012174 ;   NM_013272 ;   NM_013348 ;   NM_013372 ;   NM_014184 ;   NM_014325 ;   NM_014825 ;   NM_014982 ;   NM_015175 ;   NM_015210 ;   NM_015338 ;   NM_016257 ;   NM_017757 ;   NM_018260 ;   NM_018463 ;   NM_019594 ;   NM_019619 ;   NM_020184 ;   NM_021131 ;   NM_021903 ;   NM_022492 ;   NM_022658 ;   NM_024418 ;   NM_024819 ;   NM_025240 ;   NM_031912 ;   NM_031951 ;   NM_032782 ;   NM_032951 ;   NM_032952 ;   NM_032953 ;   NM_032954 ;   NM_033071 ;   NM_033100 ;   NM_080645 ;   NM_080912 ;   NM_080913 ;   NM_080914 ;   NM_139067 ;   NM_139199 ;   NM_145236 ;   NM_145793 ;   NM_153348 ;   NM_153464 ;   NM_170685 ;   NM_173791 ;   NM_178000 ;   NM_178001 ;   NM_178003 ;   NM_181762 ;   NM_182639 ;   NM_182961 ;   NM_194429 ;   NM_199004 ;   NM_199126 ;   NM_207123 ;   NR_003929 ;   NR_026814 ;   NR_027107 ;   NR_027263 ;   NR_027749 ;   NR_033415 ;   NR_036686 ;   NR_036687 ;   NR_037193 ;   NR_037870 ;   NR_038875 ;   NR_047516 ;   NR_047663 ;   NR_102347 ;   NR_111982 ;   NR_120400 ;   NR_125905 ;   NR_130744 ;   NR_134541 ;   NR_135242 ;   NR_144354 ;   NR_144355 ;   NR_144356 ;   NR_144357 ;   NR_146711 ;   NR_147202 ;   NR_148918 ;   NR_148919 ;  

Predicted by TAPIR

NM_000217 ;   NM_000979 ;   NM_001005366 ;   NM_001017969 ;   NM_001025200 ;   NM_001033521 ;   NM_001033522 ;   NM_001080395 ;   NM_001098536 ;   NM_001104 ;   NM_001105237 ;   NM_001114 ;   NM_001127244 ;   NM_001127245 ;   NM_001128631 ;   NM_001130420 ;   NM_001137673 ;   NM_001142326 ;   NM_001142327 ;   NM_001145044 ;   NM_001145536 ;   NM_001159554 ;   NM_001172655 ;   NM_001178005 ;   NM_001181 ;   NM_001184785 ;   NM_001184786 ;   NM_001184787 ;   NM_001184788 ;   NM_001184789 ;   NM_001184790 ;   NM_001184791 ;   NM_001185011 ;   NM_001201352 ;   NM_001204213 ;   NM_001204214 ;   NM_001204218 ;   NM_001204897 ;   NM_001204898 ;   NM_001206984 ;   NM_001258371 ;   NM_001270490 ;   NM_001276471 ;   NM_001277198 ;   NM_001277199 ;   NM_001277200 ;   NM_001281710 ;   NM_001281711 ;   NM_001281712 ;   NM_001282396 ;   NM_001282397 ;   NM_001286057 ;   NM_001286441 ;   NM_001288654 ;   NM_001288655 ;   NM_001288800 ;   NM_001289010 ;   NM_001290355 ;   NM_001291088 ;   NM_001302705 ;   NM_001303118 ;   NM_001303119 ;   NM_001307990 ;   NM_001308160 ;   NM_001321326 ;   NM_001322033 ;   NM_001324 ;   NM_001324073 ;   NM_001324076 ;   NM_001329190 ;   NM_001329938 ;   NM_001329939 ;   NM_001330288 ;   NM_001347994 ;   NM_001348249 ;   NM_001349874 ;   NM_001349875 ;   NM_001349876 ;   NM_001351316 ;   NM_001351850 ;   NM_001363734 ;   NM_001365116 ;   NM_001367835 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_001756 ;   NM_001906 ;   NM_001961 ;   NM_002039 ;   NM_002245 ;   NM_003075 ;   NM_003239 ;   NM_003481 ;   NM_003724 ;   NM_004274 ;   NM_004516 ;   NM_004579 ;   NM_004920 ;   NM_004978 ;   NM_005446 ;   NM_005559 ;   NM_006454 ;   NM_006492 ;   NM_007045 ;   NM_012174 ;   NM_013272 ;   NM_014184 ;   NM_014325 ;   NM_014494 ;   NM_014718 ;   NM_014825 ;   NM_014982 ;   NM_015082 ;   NM_015175 ;   NM_015338 ;   NM_015341 ;   NM_015645 ;   NM_016257 ;   NM_017614 ;   NM_018260 ;   NM_018385 ;   NM_018463 ;   NM_019594 ;   NM_019619 ;   NM_020379 ;   NM_021145 ;   NM_021903 ;   NM_024819 ;   NM_031433 ;   NM_031912 ;   NM_031951 ;   NM_032451 ;   NM_032590 ;   NM_033071 ;   NM_033100 ;   NM_080912 ;   NM_080913 ;   NM_080914 ;   NM_138461 ;   NM_139067 ;   NM_145236 ;   NM_145314 ;   NM_152299 ;   NM_152596 ;   NM_153464 ;   NM_173791 ;   NM_182961 ;   NM_194429 ;   NM_199126 ;   NM_207123 ;   NR_003929 ;   NR_003948 ;   NR_024549 ;   NR_024550 ;   NR_027107 ;   NR_033374 ;   NR_037193 ;   NR_037950 ;   NR_038875 ;   NR_046174 ;   NR_046454 ;   NR_046456 ;   NR_046457 ;   NR_046458 ;   NR_047663 ;   NR_073022 ;   NR_102347 ;   NR_110237 ;   NR_111982 ;   NR_125905 ;   NR_130744 ;   NR_134575 ;   NR_135242 ;   NR_144354 ;   NR_144355 ;   NR_144356 ;   NR_144357 ;   NR_145427 ;   NR_146000 ;   NR_147202 ;