The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. poe-miR1at

Accession: B53929864

Entry

ID: poe-miR1at
Alias: F574.N000221.A11
Sequence: UGGAAUGUAAAGAAGUAUGUAAA
Description: mir-1 microRNA precursor family predicted,partially
Species: 马齿苋  Species latin name: Portulaca oleracea
TCM Name: Machixian(马齿苋)  
TCM Resource (Sample number): 马齿苋(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

bpi-miR1i; cit-miR1av; cmi-miR1f; hcr-miR1am; poe-miR1at; sor-miR1as; tch-miR1am;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0044   20.6   0.0  cm       49       69 ~.           1          21 + ~. 1.00    5' 0.29
                               ??? ????????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>> CS
                mir-1  9 <[40]*UGGAAUgUAAaGAAGuAUGua 69
                               UGGAAUGUAAAGAAGUAUGUA
           tch-miR1am  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUA 21
                         ......********************* PP

Targets

Predicted by TargetFinder

NM_005562 ;   NR_015436 ;   NR_146713 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;  

Predicted by TAPIR

NR_015436 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;