The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. ssu-miR159e

Accession: B64772492

Entry

ID: ssu-miR159e
Alias: F30.L000022.A11
Sequence: UGGACUGAAGGGAGCUCCUUA
Description: microRNA MIR159 predicted
Species: 密花豆  Species latin name: Spatholobus suberectus
TCM Name: Jixueteng(鸡血藤)  
TCM Resource (Sample number): 鸡血藤(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

cco-miR159ak; gma-miR159ag; lpu-miR159ak; ssu-miR159e;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0019   19.0   0.0  cm      166      186 ~~           1          21 + ~~ 1.00 5'&3' 0.52
                                 ???????  ????????           NC
                          ~~~~~~~>>>>>>>-->>>>>>>>::::~~~~~~ CS
               MIR159   1 <[165]*UGGAcuGAAGGGAGCUCCuuu*[10]> 196
                                 UGGACUGAAGGGAGCUCCUU+
          ssu-miR159e   1 <[  0]*UGGACUGAAGGGAGCUCCUUA*[ 0]> 21
                          .......*********************...... PP

Targets

Predicted by TargetFinder

NM_001040217 ;   NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_014906 ;   NM_173626 ;   NR_024628 ;   NR_024629 ;   NR_027708 ;   NR_027709 ;   NR_048561 ;  

Predicted by TAPIR

NM_001040217 ;   NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_001319035 ;   NM_003076 ;   NM_007110 ;   NM_014906 ;   NM_024630 ;   NM_139071 ;   NM_173626 ;   NR_024628 ;   NR_024629 ;   NR_027708 ;   NR_027709 ;   NR_048561 ;