The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. spo-miR1i

Accession: B63702146

Entry

ID: spo-miR1i
Alias: F1467.M000122.A11*
Sequence: UGGAAUGUAAAGAAGUAUGUGU
Description: mir-1 microRNA precursor family predicted,partially
Species: 紫萍  Species latin name: Spirodela polyrhiza
TCM Name: Fuping(浮萍)  
TCM Resource (Sample number): 浮萍(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR1j; acr-miR1k; asc-miR1l; bca-miR1l; bpi-miR1m; cas-miR1c; cci-miR1k; cfe-miR1n; cit-miR1bi; cmd-miR1aw; fmu-miR1l; gel-miR1h; hcr-miR1at; ljp-miR1i; llu-miR1l; nnu-miR1g; poe-miR1bb; ppr-miR1f; psu-miR1f; pvl-miR1j; sar-miR1j; sch-miR1l; sdf-miR1h; sor-miR1be; spo-miR1i; tch-miR1as; zof-miR1r;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0042   20.6   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.32
                               ??? ??????????????????      NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                               UGGAAUGUAAAGAAGUAUGU
            zof-miR1r  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUGU*[0]> 22
                         ......**********************..... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR

NM_005562 ;   NR_110084 ;   NR_110084 ;