The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR8
  5. sgi-miR8d

Accession: B61216850

Entry

ID: sgi-miR8d
Alias: F6191.L000010.A25
Sequence: UAACACUGUCUGGUAACGAUG
Description: mir-8/mir-141/mir-200 microRNA precursor family predicted,partially
Species: 独角莲  Species latin name: Sauromatum giganteum
TCM Name: Baifuzi(白附子)  
TCM Resource (Sample number): 白附子(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR8e; Bswzz-miR8b; acr-miR8b; bca-miR8f; bch-miR8e; bhi-miR8a; cfe-miR8e; cit-miR8d; cmd-miR8g; fmu-miR8d; hcr-miR8f; kga-miR8a; poe-miR8f; ppr-miR8f; sgi-miR8d; tki-miR8d; vph-miR8e;

Rfam Alignments

>> mir-8  mir-8/mir-141/mir-200 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0026   19.8   0.0  cm       48       68 ~~           1          21 + ~~ 1.00 5'&3' 0.43
                                                                 ?????????   ???? ????      NC
                                                           ~~~~~~>>>>>>>>>--->>>>->>>>~~~~~ CS
                                                  mir-8  1 <[47]*uAAcACUGcCUGGUAAuGAUG*[8]> 76
                                                                 UAACACUG CUGGUAA GAUG
                                              vph-miR8e  1 <[ 0]*UAACACUGUCUGGUAACGAUG*[0]> 21
                                                           ......9********************..... PP

Targets

Predicted by TargetFinder

NM_001100829 ;   NM_001330438 ;   NM_003435 ;   NM_013264 ;   NM_014244 ;   NR_136677 ;  

Predicted by TAPIR

NM_001042494 ;   NM_001042495 ;   NM_001042496 ;   NM_001042497 ;   NM_001365088 ;   NM_005135 ;   NM_133647 ;   NM_198563 ;