The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. sgi-miR1e

Accession: B61206302

Entry

ID: sgi-miR1e
Alias: F1467.K000049.A11*
Sequence: UGGAAUGUAAAGAAGUAUGC
Description: mir-1 microRNA precursor family predicted,partially
Species: 独角莲  Species latin name: Sauromatum giganteum
TCM Name: Baifuzi(白附子)  
TCM Resource (Sample number): 白附子(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR1i; acr-miR1j; ala-miR1b; asc-miR1k; bca-miR1k; cci-miR1j; cfe-miR1m; cit-miR1bg; cmd-miR1au; esn-miR1f; fmu-miR1k; ljp-miR1h; poe-miR1az; psu-miR1e; sar-miR1i; sdf-miR1g; sgi-miR1e; sln-miR1e; sor-miR1bb; tch-miR1ar; zof-miR1q;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.008   19.4   0.0  cm       49       67 ~.           1          19 + ~. 1.00    5' 0.32
                               ??? ??????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>> CS
                mir-1 11 <[38]*UGGAAUgUAAaGAAGuAUG 67
                               UGGAAUGUAAAGAAGUAUG
            zof-miR1q  1 <[ 0]*UGGAAUGUAAAGAAGUAUG 19
                         ......******************* PP

Targets

Predicted by TargetFinder

NM_000892 ;   NM_001143957 ;   NM_001164386 ;   NM_001164387 ;   NM_001164388 ;   NM_001164389 ;   NM_001167621 ;   NM_001191060 ;   NM_001191061 ;   NM_001280539 ;   NM_001318394 ;   NM_001318396 ;   NM_001353837 ;   NM_001353838 ;   NM_001366058 ;   NM_005562 ;   NM_006789 ;   NM_013236 ;   NM_015435 ;   NM_016340 ;   NM_016354 ;   NM_017493 ;   NM_017631 ;   NM_024698 ;   NM_030784 ;   NM_183419 ;   NM_198719 ;   NR_015436 ;   NR_146713 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;  

Predicted by TAPIR

NM_000892 ;   NM_001143957 ;   NM_001161560 ;   NM_001161561 ;   NM_001161562 ;   NM_001161563 ;   NM_001161564 ;   NM_001161565 ;   NM_001161566 ;   NM_001164386 ;   NM_001164387 ;   NM_001164388 ;   NM_001164389 ;   NM_001166018 ;   NM_001167621 ;   NM_001280539 ;   NM_001318394 ;   NM_001318396 ;   NM_001353837 ;   NM_001353838 ;   NM_001370959 ;   NM_005562 ;   NM_007252 ;   NM_013236 ;   NM_015028 ;   NM_015435 ;   NM_016340 ;   NM_016354 ;   NM_017631 ;   NM_023016 ;   NM_030784 ;   NM_183419 ;   NR_015436 ;   NR_146713 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;