The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. sdi-miR1g

Accession: B60888899

Entry

ID: sdi-miR1g
Alias: F574.N000223.A11
Sequence: UGGAAUGUAAAGAAGUAUGUACC
Description: mir-1 microRNA precursor family predicted,partially
Species: 防风  Species latin name: Saposhnikovia divaricata
TCM Name: Fangfeng(防风)  
TCM Resource (Sample number): 防风(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1k; asc-miR1h; bpi-miR1k; cit-miR1ax; cmd-miR1aq; cmi-miR1h; csu-miR1j; hcr-miR1ao; lgr-miR1i; llu-miR1j; poe-miR1au; sch-miR1i; sdi-miR1g; sgi-miR1d; sor-miR1au; tch-miR1ao; zof-miR1m;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0044   20.6   0.0  cm       49       69 ~.           1          21 + ~. 1.00    5' 0.29
                               ??? ????????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>> CS
                mir-1  9 <[40]*UGGAAUgUAAaGAAGuAUGua 69
                               UGGAAUGUAAAGAAGUAUGUA
            zof-miR1m  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUA 21
                         ......********************* PP

Targets

Predicted by TargetFinder

NM_001365767 ;   NM_005562 ;  

Predicted by TAPIR

NM_001365767 ;   NM_005562 ;