The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. sdf-miR30c

Accession: B60534746

Entry

ID: sdf-miR30c
Alias: F3769.M000042.A25
Sequence: UGUAAACAUCCCCGACUGGAAG
Description: mir-30 microRNA precursor predicted,partially
Species: 白花蛇舌草  Species latin name: Scleromitrion diffusum
TCM Name:
TCM Resource (Sample number): 白花蛇舌草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30af; Bswzz-miR30b; aar-miR30a; acr-miR30b; asc-miR30ad; bca-miR30ab; bch-miR30ac; bhi-miR30aa; cas-miR30a; cba-miR30b; cci-miR30aa; cfe-miR30ad; cid-miR30a; cit-miR30an; cmd-miR30ag; cmo-miR30a; cof-miR30b; csp-miR30b; csu-miR30b; eja-miR30a; epr-miR30a; esn-miR30a; est-miR30a; fmu-miR30aa; fsu-miR30a; fth-miR30a; gel-miR30a; hcr-miR30ae; hof-miR30a; lch-miR30a; lcr-miR30; lgr-miR30b; ljc-miR30a; lji-miR30a; ljn-miR30a; ljo-miR30a; ljp-miR30aa; lln-miR30a; llu-miR30a; mal-miR30a; mpu-miR30a; nnu-miR30a; nte-miR30a; pfr-miR30a; pgi-miR30a; poe-miR30ag; ppr-miR30ae; psu-miR30a; pvl-miR30a; run-miR30a; sar-miR30a; sbc-miR30a; sdf-miR30c; sgi-miR30ad; sln-miR30a; sor-miR30am; tch-miR30ac; tfa-miR30a; tki-miR30ae; vph-miR30ab; zof-miR30ac;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00033   25.1   0.0  cm        1       22 [~           1          22 + [~ 1.00    3' 0.50
                                                          ??????????  ?????????       NC
                                                         :<<<<<<<<<<--<<<<<<<<<~~~~~~ CS
                                               mir-30  1 UGuAAACAUCcUcGACuGgaAG*[38]> 60
                                                         UGUAAACAUCC+CGACUGGAAG
                                          zof-miR30ac  1 UGUAAACAUCCCCGACUGGAAG*[ 0]> 22
                                                         **********************...... PP

Targets

Predicted by TargetFinder

NM_001369201 ;  

Predicted by TAPIR