The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. sdf-miR133f

Accession: B60601336

Entry

ID: sdf-miR133f
Alias: F12642.N000064.A25
Sequence: UUUGGUCCCCUUCAACCAGCUGG
Description: mir-133 microRNA precursor family predicted,partially
Species: 白花蛇舌草  Species latin name: Scleromitrion diffusum
TCM Name:
TCM Resource (Sample number): 白花蛇舌草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR133e; asc-miR133l; bca-miR133g; cci-miR133k; cfe-miR133n; cit-miR133cd; cmd-miR133ba; cmj-miR133c; cof-miR133i; csu-miR133k; hof-miR133c; ljp-miR133i; llu-miR133d; mal-miR133b; poe-miR133ba; sar-miR133f; sch-miR133j; sdf-miR133f; sln-miR133e; sor-miR133ce; tch-miR133at; tki-miR133c; zof-miR133n;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   4.9e-05   24.5   0.0  cm       51       72 ~.           1          22 + ~. 1.00    5' 0.55
                                                            ??????     ?? ???????  NC
                                                      ~~~~~~>>>>>>----->>->>>>>>>- CS
                                           mir-133 14 <[37]*UuUGGUCCCCUUCAACCAGCuG 72
                                                            UUUGGUCCCCUUCAACCAGCUG
                                       zof-miR133n  1 <[ 0]*UUUGGUCCCCUUCAACCAGCUG 22
                                                      ......********************** PP

Targets

Predicted by TargetFinder

NM_001145153 ;   NM_001364885 ;   NM_002830 ;   NM_025081 ;   NM_144649 ;  

Predicted by TAPIR

NM_001145153 ;   NM_001364885 ;   NM_002830 ;   NM_024791 ;   NM_025081 ;   NM_144649 ;