The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. sch-miR27c

Accession: B60217590

Entry

ID: sch-miR27c
Alias: F3421.N000105.A25
Sequence: UUCACAGUGGCUAAGUUCUGCAU
Description: microRNA mir-27 predicted
Species: 阴行草  Species latin name: Siphonostegia chinensis
TCM Name: Beiliujinu(北刘寄奴)  
TCM Resource (Sample number): 北刘寄奴(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27e; asc-miR27d; bca-miR27e; bch-miR27f; cit-miR27av; cmd-miR27ah; hcr-miR27aj; poe-miR27ak; pvl-miR27e; sch-miR27c; sdi-miR27b; sor-miR27ar; vph-miR27c; zof-miR27d;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00059   21.8   0.0  cm       56       77 ~.           1          22 + ~. 1.00    5' 0.45
                                                              ?????  ???????????     NC
                                                        ~~~~~~>>>>>-->>>>>>>>>>>:::: CS
                                              mir-27 15 <[41]*uUCACAGuGGCUAAGuuCuGCu 77
                                                              UUCACAGUGGCUAAGUUCUGC+
                                          zof-miR27d  1 <[ 0]*UUCACAGUGGCUAAGUUCUGCA 22
                                                        ......********************** PP

Targets

Predicted by TargetFinder

NM_003566 ;   NM_021916 ;  

Predicted by TAPIR