The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. sch-miR133g

Accession: B60179385

Entry

ID: sch-miR133g
Alias: F1236.N000038.A11*
Sequence: UUUGGUCCCCUUCAACCAGCUGC
Description: mir-133 microRNA precursor family predicted,partially
Species: 阴行草  Species latin name: Siphonostegia chinensis
TCM Name: Beiliujinu(北刘寄奴)  
TCM Resource (Sample number): 北刘寄奴(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR133d; acr-miR133d; asc-miR133i; bca-miR133e; bpi-miR133an; cci-miR133h; cfe-miR133i; cit-miR133av; cmd-miR133ao; cmi-miR133j; cof-miR133e; cph-miR133c; csp-miR133e; csu-miR133g; epr-miR133c; esn-miR133c; gel-miR133d; hcr-miR133ar; hof-miR133b; ljp-miR133g; poe-miR133al; ppr-miR133b; psu-miR133b; sar-miR133d; sch-miR133g; sdf-miR133d; sgi-miR133b; sln-miR133c; sor-miR133as; tch-miR133aj; zof-miR133j;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   4.2e-05   24.7   0.0  cm       51       73 ~~           1          23 + ~~ 1.00 5'&3' 0.57
                              ??????     ?? ???????         NC
                        ~~~~~~>>>>>>----->>->>>>>>>--~~~~~~ CS
             mir-133  1 <[50]*UuUGGUCCCCUUCAACCAGCuGU*[14]> 87
                              UUUGGUCCCCUUCAACCAGCUG+
         zof-miR133j  1 <[ 0]*UUUGGUCCCCUUCAACCAGCUGC*[ 0]> 23
                        ......***********************...... PP

Targets

Predicted by TargetFinder

NM_000533 ;   NM_001128834 ;   NM_001145153 ;   NM_001305004 ;   NM_001364885 ;   NM_022744 ;   NM_025081 ;   NM_144649 ;   NM_199478 ;  

Predicted by TAPIR

NM_000533 ;   NM_001128834 ;   NM_001145153 ;   NM_001305004 ;   NM_001364885 ;   NM_015946 ;   NM_022744 ;   NM_024791 ;   NM_025081 ;   NM_144649 ;   NM_199478 ;