The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. sch-miR133m

Accession: B60258581

Entry

ID: sch-miR133m
Alias: F12642.N000074.A11
Sequence: UUUGGUCCCCUCCAACCAGCUGU
Description: mir-133 microRNA precursor family predicted,partially
Species: 阴行草  Species latin name: Siphonostegia chinensis
TCM Name: Beiliujinu(北刘寄奴)  
TCM Resource (Sample number): 北刘寄奴(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR133g; bpi-miR133av; cfe-miR133q; cit-miR133ck; hcr-miR133bd; poe-miR133bg; sar-miR133i; sch-miR133m; sor-miR133cm; tch-miR133ay;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00014   22.9   0.0  cm       51       73 ~~           1          23 + ~~ 1.00 5'&3' 0.57
                               ??????     ?? ???????         NC
                         ~~~~~~>>>>>>----->>->>>>>>>--~~~~~~ CS
              mir-133  1 <[50]*UuUGGUCCCCUUCAACCAGCuGU*[14]> 87
                               UUUGGUCCCCU CAACCAGCUGU
         tch-miR133ay  1 <[ 0]*UUUGGUCCCCUCCAACCAGCUGU*[ 0]> 23
                         ......***********************...... PP

Targets

Predicted by TargetFinder

NM_001206838 ;   NM_001206839 ;   NM_001369395 ;   NM_001369396 ;   NM_002851 ;  

Predicted by TAPIR

NM_001106 ;   NM_001206838 ;   NM_001206839 ;   NM_001369395 ;   NM_001369396 ;   NM_002851 ;   NM_018397 ;