The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR171
  5. sch-miR171

Accession: B60120779

Entry

ID: sch-miR171
Alias: F392.L000024.A3D*
Sequence: UAUUGGCCUGGUUCACUCAGA
Description: MIR171 putative
Species: 阴行草  Species latin name: Siphonostegia chinensis
TCM Name: Beiliujinu(北刘寄奴)  
TCM Resource (Sample number): 北刘寄奴(1)
Predicted by Mirnovo: -
Evidence support: Mirbase
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR170-5p; aly-miR171a-5p; ath-miR170-5p; ath-miR171a-5p; cas-miR170; cas-miR171a-5p; csi-miR171f-5p; gma-miR171j-5p; sly-miR171f; stu-miR171a-5p; stu-miR171c-5p;

Bencao Homologs

ala-miR171; cco-miR171c; cja-miR171; cof-miR171; dst-miR171; ini-miR171; sar-miR171; sch-miR171; sdi-miR171; sto-miR171b;

Rfam Alignments

>> MIR171_1  microRNA MIR171_1
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?      0.06   17.0   0.0  cm       13       33 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                                ???????  ?????? ??          NC
                                                          ~~~~~~<<<<<<<--<<<<<<-<<___~~~~~~ CS
                                              MIR171_1  1 <[12]*UaUUGGccuGGUUCAaUCAGA*[68]> 101
                                                                UAUUGGCCUGGUUCA+UCAGA
                                           sto-miR171b  1 <[ 0]*UAUUGGCCUGGUUCACUCAGA*[ 0]> 21
                                                          ......*********************...... PP

Targets

Predicted by TargetFinder

NM_003482 ;  

Predicted by TAPIR

NM_001256155 ;   NM_002471 ;   NM_003482 ;   NM_006269 ;