The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. sbc-miR30c

Accession: B59894840

Entry

ID: sbc-miR30c
Alias: F3769.N000100.A25
Sequence: UGUAAACAUCCUCGACUGGAAGC
Description: mir-30 microRNA precursor predicted,partially
Species: 黄芩  Species latin name: Scutellaria baicalensis
TCM Name: Huangqin(黄芩)  
TCM Resource (Sample number): 黄芩(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30ak; Bswzz-miR30e; acr-miR30d; asc-miR30ag; bca-miR30ae; bch-miR30ag; bhi-miR30ac; bpi-miR30d; cba-miR30d; cci-miR30ad; cfe-miR30ah; cit-miR30bl; cmd-miR30an; cmi-miR30c; cmj-miR30b; cmo-miR30c; cof-miR30e; cri-miR30b; cso-miR30a; csp-miR30e; csu-miR30d; eja-miR30c; epr-miR30c; esn-miR30e; fmu-miR30ae; fsu-miR30c; gel-miR30c; hcr-miR30am; kga-miR30a; lba-miR30b; lgr-miR30d; ljc-miR30c; lji-miR30c; ljn-miR30c; ljp-miR30ad; mal-miR30c; nnu-miR30c; nte-miR30c; pfr-miR30c; poe-miR30aq; ppr-miR30ah; psu-miR30c; pvl-miR30d; run-miR30b; sar-miR30d; sbc-miR30c; sdf-miR30f; sgi-miR30ag; sln-miR30d; sor-miR30bi; tch-miR30ag; tfa-miR30c; tki-miR30ah; tmo-miR30a; vph-miR30ae; zof-miR30ag;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   5.6e-05   28.0   0.0  cm        1       23 [~           1          23 + [~ 1.00    3' 0.48
                                                          ??????????  ??????????       NC
                                                         :<<<<<<<<<<--<<<<<<<<<<~~~~~~ CS
                                               mir-30  1 UGuAAACAUCcUcGACuGgaAGC*[37]> 60
                                                         UGUAAACAUCCUCGACUGGAAGC
                                          zof-miR30ag  1 UGUAAACAUCCUCGACUGGAAGC*[ 0]> 23
                                                         ***********************...... PP

Targets

Predicted by TargetFinder

NR_034130 ;  

Predicted by TAPIR

NR_029846 ;