The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR164
  5. sbc-miR164a

Accession: B59640341

Entry

ID: sbc-miR164a
Alias: F12.L000006.A3D
Sequence: UGGAGAAGCAGGGCACGUGCA
Description: MIR164 putative
Species: 黄芩  Species latin name: Scutellaria baicalensis
TCM Name: Huangqin(黄芩)  
TCM Resource (Sample number): 黄芩(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR164a-5p; aly-miR164b-5p; aof-miR164; ata-miR164b-5p; ata-miR164c-5p; ath-miR164a; ath-miR164b-5p; atr-miR164a; atr-miR164b; bdi-miR164a-5p; bdi-miR164b; bdi-miR164e; bna-miR164a; bra-miR164a; cas-miR164; cme-miR164c; cme-miR164d; cpa-miR164a; cpa-miR164b; cpa-miR164c; csi-miR164a-5p; csi-miR164b-5p; csi-miR164c-5p; csi-miR164d-5p; ctr-miR164; fve-miR164a-5p; fve-miR164b; ghr-miR164; gma-miR164a; gma-miR164e; gma-miR164f; gma-miR164g; gma-miR164h; gma-miR164i; gma-miR164j; gma-miR164k; lus-miR164a; lus-miR164b; lus-miR164c; lus-miR164d; lus-miR164e; mdm-miR164b; mdm-miR164c; mdm-miR164d; mdm-miR164e; mdm-miR164f; mes-miR164a; mes-miR164b; mes-miR164c; mtr-miR164a; mtr-miR164b; mtr-miR164c; nta-miR164a; nta-miR164b; osa-miR164a; osa-miR164b; osa-miR164f; ppe-miR164a; ppe-miR164b; ppe-miR164c; ptc-miR164a; ptc-miR164b; ptc-miR164c; ptc-miR164d; ptc-miR164e; rco-miR164a; rco-miR164b; rco-miR164c; sbi-miR164a; sbi-miR164d; sbi-miR164e; sly-miR164a-5p; sly-miR164b-5p; ssl-miR164a; ssl-miR164b; tae-miR164; tcc-miR164a; tcc-miR164b; vvi-miR164a; vvi-miR164c; vvi-miR164d; zma-miR164a-5p; zma-miR164b-5p; zma-miR164c-5p; zma-miR164d-5p; zma-miR164g-5p;

Bencao Homologs

apl-miR164a; cof-miR164a; gja-miR164a; hcr-miR164a; lba-miR164; lfo-miR164a; pcl-miR164; por-miR164a; pvl-miR164a; rch-miR164a; sbc-miR164a; smi-miR164a;

Rfam Alignments

>> MIR164  microRNA MIR164
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00012   22.0   0.0  cm       11       31 ~~           1          21 + ~~ 1.00 5'&3' 0.62
                                                              ????????  ???????????       NC
                                                        ~~~~~~<<<<<<<<--<<<<<<<<<<<~~~~~~ CS
                                              MIR164  1 <[10]*UGGaGAAGCAGgGCACgUGca*[78]> 109
                                                              UGGAGAAGCAGGGCACGUGCA
                                         smi-miR164a  1 <[ 0]*UGGAGAAGCAGGGCACGUGCA*[ 0]> 21
                                                        ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001080437 ;   NM_001137673 ;   NM_001145306 ;   NM_001171191 ;   NM_001171192 ;   NM_001171193 ;   NM_001206984 ;   NM_001256534 ;   NM_001259 ;   NM_001277198 ;   NM_001277199 ;   NM_001277200 ;   NM_001287387 ;   NM_001288800 ;   NM_001302705 ;   NM_001329938 ;   NM_001329939 ;   NM_002039 ;   NM_003239 ;   NM_004516 ;   NM_005984 ;   NM_014184 ;   NM_014423 ;   NM_017711 ;   NM_018463 ;   NM_153464 ;   NM_173791 ;   NM_199126 ;   NM_207123 ;   NR_003929 ;   NR_033415 ;   NR_046298 ;   NR_102347 ;   NR_130744 ;   NR_144354 ;   NR_144355 ;   NR_144356 ;   NR_144357 ;   NR_147202 ;  

Predicted by TAPIR

NM_001013836 ;   NM_001013837 ;   NM_001145306 ;   NM_001171191 ;   NM_001171192 ;   NM_001171193 ;   NM_001172655 ;   NM_001206984 ;   NM_001257328 ;   NM_001257329 ;   NM_001257330 ;   NM_001257331 ;   NM_001259 ;   NM_001286441 ;   NM_001302705 ;   NM_001304523 ;   NM_001304524 ;   NM_001304525 ;   NM_001321544 ;   NM_001329938 ;   NM_001329939 ;   NM_001330064 ;   NM_002039 ;   NM_003239 ;   NM_003550 ;   NM_004313 ;   NM_017711 ;   NM_018260 ;   NM_152596 ;   NM_173791 ;   NM_178526 ;   NM_199004 ;   NM_207123 ;   NR_003929 ;   NR_033374 ;   NR_033415 ;   NR_047516 ;   NR_144354 ;   NR_144355 ;   NR_144356 ;   NR_144357 ;