The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. sar-miR30c

Accession: B58922052

Entry

ID: sar-miR30c
Alias: F3769.N000099.A25
Sequence: UGUAAACAUCCCCGACUGGAAGC
Description: mir-30 microRNA precursor predicted,partially
Species: 丁香蒲桃  Species latin name: Syzygium aromaticum
TCM Name:
TCM Resource (Sample number): 母丁香(2)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30aj; Bswzz-miR30d; aar-miR30b; acn-miR30; acr-miR30c; asc-miR30af; bca-miR30ad; bch-miR30af; bhi-miR30ab; bpi-miR30c; cas-miR30b; cba-miR30c; cci-miR30ac; cde-miR30a; cfe-miR30ag; cit-miR30bk; cma-miR30a; cmd-miR30am; cmj-miR30a; cmo-miR30b; cof-miR30d; cri-miR30a; csp-miR30d; csu-miR30c; cya-miR30a; ehu-miR30a; eja-miR30b; epr-miR30b; esn-miR30d; fmu-miR30ad; fsu-miR30b; fth-miR30b; gel-miR30b; hcr-miR30al; hof-miR30b; lba-miR30a; lch-miR30b; lgr-miR30c; ljc-miR30b; lji-miR30b; ljn-miR30b; ljp-miR30ac; lln-miR30b; llu-miR30c; mal-miR30b; nnu-miR30b; nte-miR30b; pav-miR30a; pcn-miR30a; pfr-miR30b; pgi-miR30b; poe-miR30ap; ppr-miR30ag; psu-miR30b; pvl-miR30c; sar-miR30c; sbc-miR30b; sch-miR30b; sdf-miR30e; sgi-miR30af; sln-miR30c; sor-miR30bh; tch-miR30af; tfa-miR30b; tki-miR30ag; vph-miR30ad; vtr-miR30; zof-miR30af;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00011   26.9   0.0  cm        1       23 [~           1          23 + [~ 1.00    3' 0.52
                                                        ??????????  ??????????       NC
                                                       :<<<<<<<<<<--<<<<<<<<<<~~~~~~ CS
                                             mir-30  1 UGuAAACAUCcUcGACuGgaAGC*[37]> 60
                                                       UGUAAACAUCC+CGACUGGAAGC
                                        zof-miR30af  1 UGUAAACAUCCCCGACUGGAAGC*[ 0]> 23
                                                       ***********************...... PP

Targets

Predicted by TargetFinder

NM_001369201 ;  

Predicted by TAPIR

NM_001369201 ;   NR_029846 ;