The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. sar-miR1f

Accession: B58765545

Entry

ID: sar-miR1f
Alias: F574.M000084.A11
Sequence: UGGAAUGUAAAGAAGUAUGUUU
Description: mir-1 microRNA precursor family predicted,partially
Species: 丁香蒲桃  Species latin name: Syzygium aromaticum
TCM Name:
TCM Resource (Sample number): 母丁香(2)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1f; cfe-miR1f; cit-miR1ak; cmd-miR1ak; cof-miR1f; fmu-miR1f; hcr-miR1ah; poe-miR1ak; pvl-miR1f; sar-miR1f; sor-miR1ak; spo-miR1g; tch-miR1ag; tki-miR1g;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0052   20.3   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.27
                              ??? ??????????????????      NC
                        ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
               mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                              UGGAAUGUAAAGAAGUAUGU
           tki-miR1g  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUUU*[0]> 22
                        ......**********************..... PP

Targets

Predicted by TargetFinder

NM_001272069 ;   NM_001362969 ;   NM_016010 ;   NM_017752 ;   NR_003679 ;   NR_029780 ;   NR_136192 ;   NR_136193 ;   NR_136194 ;   NR_136197 ;   NR_136198 ;   NR_136199 ;   NR_136200 ;   NR_136201 ;   NR_156423 ;  

Predicted by TAPIR

NM_001362969 ;   NM_016010 ;   NM_017752 ;   NR_003679 ;   NR_136192 ;   NR_136193 ;   NR_136194 ;   NR_136197 ;   NR_136198 ;   NR_136199 ;   NR_136200 ;   NR_136201 ;   NR_156423 ;