The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. sor-lin-4j

Accession: B63109705

Entry

ID: sor-lin-4j
Alias: F18150.L000016.A11
Sequence: CCCCUGAGACCCUAACUUGUG
Description: lin-4 microRNA precursor predicted,partially
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

poe-lin-4i; sor-lin-4j; tch-lin-4d;

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0085   18.3   0.0  cm        8       27 .~           2          21 + .~ 1.00    3' 0.55
                         ??? ???? ??? ???????       NC
                         <<<-<<<<-<<<-<<<<<<<~~~~~~ CS
                lin-4  8 CCCUGAGACCccAAcuuGUG*[37]> 64
                         CCCUGAGACCC AACUUGUG
           tch-lin-4d  2 CCCUGAGACCCUAACUUGUG*[ 0]> 21
                         ********************...... PP

Targets

Predicted by TargetFinder

NM_001005851 ;   NM_001181 ;   NM_080912 ;   NM_080914 ;  

Predicted by TAPIR

NM_001005851 ;   NM_001100599 ;   NM_001288805 ;   NM_001288807 ;   NM_001288808 ;   NM_001288809 ;   NM_173831 ;   NR_026961 ;   NR_108100 ;   NR_110190 ;   NR_110191 ;   NR_110192 ;   NR_110193 ;   NR_148221 ;