Entry

ID: sor-lin-4h
Alias: F14292.L000806.A11
Sequence: UCCCUGAGACCCUAACCUGUG
Description: lin-4 microRNA precursor predicted,partially
Species: 豨莶 Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

cit-lin-4h; sor-lin-4h;

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0042   19.4   0.0  cm        7       27 ~~           1          21 + ~~ 1.00 5'&3' 0.57
                               ??? ???? ??? ???????       NC
                         ~~~~~-<<<-<<<<-<<<-<<<<<<<~~~~~~ CS
                lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUG*[44]> 71
                              UCCCUGAGACCC AAC UGUG
           sor-lin-4h  1 <[0]*UCCCUGAGACCCUAACCUGUG*[ 0]> 21
                         .....*********************...... PP

Targets

Predicted by TargetFinder

NM_000394 ; NM_001005851 ; NM_001040273 ; NM_001257135 ; NM_001314050 ; NM_001320719 ; NM_001363766 ; NM_002309 ; NM_015540 ; NM_018196 ; NM_173555 ; NR_073580 ; NR_073581 ; NR_073582 ; NR_073591 ; NR_073592 ; NR_073593 ; NR_073594 ; NR_073595 ;

Predicted by TAPIR

NM_001005851 ; NM_001040273 ; NM_015540 ; NM_173555 ; NR_033962 ; NR_073580 ; NR_073581 ; NR_073582 ; NR_073591 ; NR_073592 ; NR_073593 ; NR_073594 ; NR_073595 ; NR_108100 ;

The Bencao (Herbal) Database（本草数据库）

Accession: B63099839