The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. sor-miR30aq

Accession: B63029959

Entry

ID: sor-miR30aq
Alias: F3769.M000047.A11
Sequence: UGUAAACAUCCCCGACUGGAAU
Description: mir-30 microRNA precursor predicted,partially
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30ah; cit-miR30ar; cmd-miR30ai; fmu-miR30ac; hcr-miR30ag; poe-miR30ai; sgi-miR30ae; sor-miR30aq; tch-miR30ae; zof-miR30ae;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.008   20.0   0.0  cm        1       22 [~           1          22 + [~ 0.99    3' 0.45
                          ??????????  ?????????       NC
                         :<<<<<<<<<<--<<<<<<<<<~~~~~~ CS
               mir-30  1 UGuAAACAUCcUcGACuGgaAG*[38]> 60
                         UGUAAACAUCC+CGACUGGAA
          zof-miR30ae  1 UGUAAACAUCCCCGACUGGAAU*[ 0]> 22
                         ********************98...... PP

Targets

Predicted by TargetFinder

NM_020632 ;   NM_130840 ;   NM_130841 ;  

Predicted by TAPIR

NM_020632 ;   NM_130840 ;   NM_130841 ;