The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. sor-miR27bm

Accession: B63102460

Entry

ID: sor-miR27bm
Alias: F15151.L000073.A25
Sequence: UUCACAGUGGCUAAGUUCUGU
Description: microRNA mir-27 predicted
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27n; acr-miR27f; asc-miR27j; bca-miR27m; bch-miR27k; cci-miR27h; cfe-miR27n; cit-miR27bo; cmd-miR27au; cof-miR27h; csp-miR27e; eja-miR27b; epr-miR27e; esn-miR27d; fmu-miR27h; gel-miR27f; hcr-miR27as; lji-miR27c; ljp-miR27i; llu-miR27g; nnu-miR27d; pgi-miR27b; poe-miR27av; ppr-miR27h; psu-miR27e; pvl-miR27g; sar-miR27e; sch-miR27f; sdf-miR27f; sdi-miR27c; sgi-miR27h; sor-miR27bm; tch-miR27h; tfa-miR27b; tki-miR27f; vph-miR27g; zof-miR27k;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0014   20.4   0.0  cm       56       75 ~.           1          20 + ~. 1.00    5' 0.45
                                                                ?????  ???????????   NC
                                                          ~~~~~~>>>>>-->>>>>>>>>>>:: CS
                                                mir-27 15 <[41]*uUCACAGuGGCUAAGuuCuG 75
                                                                UUCACAGUGGCUAAGUUCUG
                                            zof-miR27k  1 <[ 0]*UUCACAGUGGCUAAGUUCUG 20
                                                          ......******************** PP

Targets

Predicted by TargetFinder

NM_001005291 ;   NM_001128431 ;   NM_001131019 ;   NM_001135153 ;   NM_001242376 ;   NM_001278196 ;   NM_001321096 ;   NM_001349105 ;   NM_001349106 ;   NM_001349107 ;   NM_001349108 ;   NM_001349111 ;   NM_001351655 ;   NM_001351657 ;   NM_001351658 ;   NM_001351659 ;   NM_001351660 ;   NM_001363846 ;   NM_002055 ;   NM_004176 ;   NM_006352 ;   NM_015359 ;   NM_021916 ;   NM_022055 ;   NM_152996 ;   NM_205768 ;   NR_104664 ;   NR_110744 ;   NR_146056 ;  

Predicted by TAPIR

NM_001005291 ;   NM_001128431 ;   NM_001131019 ;   NM_001134337 ;   NM_001134338 ;   NM_001142568 ;   NM_001242376 ;   NM_001276286 ;   NM_001321042 ;   NM_001321096 ;   NM_001321749 ;   NM_001351655 ;   NM_001351656 ;   NM_001351657 ;   NM_001351658 ;   NM_001351659 ;   NM_001351660 ;   NM_001363846 ;   NM_002055 ;   NM_004176 ;   NM_004466 ;   NM_005828 ;   NM_007219 ;   NM_015359 ;   NM_020235 ;   NM_021916 ;