The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. sor-miR27co

Accession: B63195235

Entry

ID: sor-miR27co
Alias: F160710.N000014.A11*
Sequence: UUCACAGUGGCUAAGUUCUGAAA
Description: microRNA mir-27 predicted
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27u; bca-miR27s; cit-miR27co; cmd-miR27bh; hcr-miR27bc; sgi-miR27j; sor-miR27co;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0015   20.4   0.0  cm       56       75 ~.           1          20 + ~. 1.00    5' 0.45
                               ?????  ???????????   NC
                         ~~~~~~>>>>>-->>>>>>>>>>>:: CS
               mir-27 15 <[41]*uUCACAGuGGCUAAGuuCuG 75
                               UUCACAGUGGCUAAGUUCUG
          sor-miR27co  1 <[ 0]*UUCACAGUGGCUAAGUUCUG 20
                         ......******************** PP

Targets

Predicted by TargetFinder

NM_000489 ;   NM_021916 ;   NM_138270 ;  

Predicted by TAPIR

NM_021916 ;