The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. sor-miR1br

Accession: B63134627

Entry

ID: sor-miR1br
Alias: F31794.K000234.A11
Sequence: UGGAAUGUAAAGAAGUAUGA
Description: mir-1 microRNA precursor family predicted,partially
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

asc-miR1s; cci-miR1q; cfe-miR1v; cit-miR1bu; cmd-miR1bh; hcr-miR1bd; ljp-miR1o; poe-miR1bl; sor-miR1br; tch-miR1bc;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.008   19.4   0.0  cm       49       67 ~.           1          19 + ~. 1.00    5' 0.32
                               ??? ??????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>> CS
                mir-1 11 <[38]*UGGAAUgUAAaGAAGuAUG 67
                               UGGAAUGUAAAGAAGUAUG
           tch-miR1bc  1 <[ 0]*UGGAAUGUAAAGAAGUAUG 19
                         ......******************* PP

Targets

Predicted by TargetFinder

NM_000277 ;   NM_000721 ;   NM_000855 ;   NM_001002860 ;   NM_001025068 ;   NM_001025069 ;   NM_001039111 ;   NM_001100829 ;   NM_001145373 ;   NM_001201477 ;   NM_001205293 ;   NM_001205294 ;   NM_001256424 ;   NM_001267616 ;   NM_001267618 ;   NM_001289133 ;   NM_001349476 ;   NM_001349477 ;   NM_001349478 ;   NM_001349479 ;   NM_001354304 ;   NM_001365454 ;   NM_004852 ;   NM_005562 ;   NM_006789 ;   NM_018092 ;   NM_018984 ;   NM_020207 ;   NM_052958 ;   NM_153700 ;   NM_198399 ;   NR_038444 ;   NR_110150 ;   NR_110151 ;   NR_146078 ;   NR_146186 ;   NR_146187 ;   NR_146455 ;   NR_146713 ;  

Predicted by TAPIR

NM_000277 ;   NM_001002860 ;   NM_001161560 ;   NM_001161561 ;   NM_001161562 ;   NM_001161563 ;   NM_001161564 ;   NM_001161565 ;   NM_001161566 ;   NM_001276277 ;   NM_001281471 ;   NM_001289133 ;   NM_001345871 ;   NM_001345872 ;   NM_001345873 ;   NM_001345874 ;   NM_001345875 ;   NM_001345876 ;   NM_001345877 ;   NM_001345878 ;   NM_001349476 ;   NM_001349477 ;   NM_001349478 ;   NM_001349479 ;   NM_001354304 ;   NM_005562 ;   NM_015028 ;   NM_015216 ;   NM_052958 ;   NM_133448 ;   NM_153700 ;   NM_175872 ;   NR_027106 ;   NR_146078 ;   NR_146186 ;   NR_146187 ;   NR_146713 ;