The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. sor-miR1al

Accession: B62919512

Entry

ID: sor-miR1al
Alias: F574.M000085.A11
Sequence: UGGAAUGUAAAGAAGUGUGUAC
Description: mir-1 microRNA precursor family predicted,partially
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

cit-miR1al; cmd-miR1al; hcr-miR1ai; poe-miR1al; sor-miR1al; tch-miR1ah;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0064   19.9   0.0  cm       49       69 ~.           1          21 + ~. 1.00    5' 0.33
                               ??? ????????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>> CS
                mir-1  9 <[40]*UGGAAUgUAAaGAAGuAUGua 69
                               UGGAAUGUAAAGAAGU UGUA
           tch-miR1ah  1 <[ 0]*UGGAAUGUAAAGAAGUGUGUA 21
                         ......********************* PP

Targets

Predicted by TargetFinder

NM_001143957 ;   NM_001365767 ;   NM_005562 ;   NM_030784 ;   NM_153442 ;   NR_103535 ;   NR_135006 ;  

Predicted by TAPIR

NM_001370529 ;   NM_002037 ;   NM_005562 ;   NM_153048 ;