The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. sor-miR133dt

Accession: B63094382

Entry

ID: sor-miR133dt
Alias: F12642.O000154.A11
Sequence: UUGGUCCCCUUCAACCAGCUGUUU
Description: mir-133 microRNA precursor family predicted,partially
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR133j; asc-miR133p; bpi-miR133bb; cci-miR133o; cfe-miR133t; cit-miR133do; cmd-miR133bo; csu-miR133m; hcr-miR133bl; ljp-miR133m; poe-miR133bp; sor-miR133dt; tch-miR133bg;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   7.7e-05   23.9   0.0  cm       52       73 ~.           1          22 + ~. 1.00    5' 0.55
                               ?????     ?? ???????   NC
                         ~~~~~~>>>>>----->>->>>>>>>-- CS
              mir-133 14 <[38]*uUGGUCCCCUUCAACCAGCuGU 73
                               UUGGUCCCCUUCAACCAGCUGU
         tch-miR133bg  1 <[ 0]*UUGGUCCCCUUCAACCAGCUGU 22
                         ......********************** PP

Targets

Predicted by TargetFinder

NM_001145153 ;   NM_001308394 ;   NM_001349316 ;   NM_001349319 ;   NM_001349320 ;   NM_001349321 ;   NM_001349322 ;   NM_001349323 ;   NM_001349324 ;   NM_001349325 ;   NM_001349326 ;   NM_001364885 ;   NM_003278 ;   NM_012157 ;   NM_144649 ;   NR_146121 ;   NR_146122 ;   NR_146123 ;   NR_146124 ;   NR_146125 ;   NR_146126 ;   NR_146127 ;   NR_146128 ;   NR_146129 ;   NR_146130 ;   NR_146131 ;   NR_146132 ;   NR_146133 ;   NR_146134 ;   NR_146135 ;  

Predicted by TAPIR

NM_001145153 ;   NM_001308394 ;   NM_001349316 ;   NM_001349319 ;   NM_001349320 ;   NM_001349321 ;   NM_001349322 ;   NM_001349323 ;   NM_001349324 ;   NM_001349325 ;   NM_001349326 ;   NM_001364885 ;   NM_003278 ;   NM_012157 ;   NM_025081 ;   NM_144649 ;   NR_146121 ;   NR_146122 ;   NR_146123 ;   NR_146124 ;   NR_146125 ;   NR_146126 ;   NR_146127 ;   NR_146128 ;   NR_146129 ;   NR_146130 ;   NR_146131 ;   NR_146132 ;   NR_146133 ;   NR_146134 ;   NR_146135 ;