The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. sor-miR133af

Accession: B62971099

Entry

ID: sor-miR133af
Alias: F1236.L000006.A11*
Sequence: UGGUCCCCUUCAACCAGCUGU
Description: mir-133 microRNA precursor family predicted,partially
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR133a; asc-miR133a; bpi-miR133af; cfe-miR133b; cit-miR133af; cmd-miR133ac; cmi-miR133d; hcr-miR133ah; ili-miR133a; lgr-miR133a; poe-miR133ac; sch-miR133a; sor-miR133af; tch-miR133ac; zof-miR133b;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00018   22.5   0.0  cm       53       73 ~~           1          21 + ~~ 1.00 5'&3' 0.57
                   ????     ?? ???????         NC
             ~~~~~~>>>>----->>->>>>>>>--~~~~~~ CS
  mir-133  1 <[52]*UGGUCCCCUUCAACCAGCuGU*[14]> 87
                   UGGUCCCCUUCAACCAGCUGU
zof-miR133b  1 <[ 0]*UGGUCCCCUUCAACCAGCUGU*[ 0]> 21
             ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001145153 ;   NM_001297669 ;   NM_001297670 ;   NM_001349316 ;   NM_001349319 ;   NM_001349320 ;   NM_001349321 ;   NM_001349322 ;   NM_001349323 ;   NM_001349324 ;   NM_001349325 ;   NM_001349326 ;   NM_001364885 ;   NM_002737 ;   NM_007037 ;   NM_012157 ;   NM_022744 ;   NM_025081 ;   NM_144649 ;   NR_038883 ;   NR_134559 ;   NR_146121 ;   NR_146122 ;   NR_146123 ;   NR_146124 ;   NR_146125 ;   NR_146126 ;   NR_146127 ;   NR_146128 ;   NR_146129 ;   NR_146130 ;   NR_146131 ;   NR_146132 ;   NR_146133 ;   NR_146134 ;   NR_146135 ;  

Predicted by TAPIR

NM_001102 ;   NM_001130004 ;   NM_001130005 ;   NM_001205262 ;   NM_001256141 ;   NM_001297669 ;   NM_001297670 ;   NM_001297671 ;   NM_001297672 ;   NM_001349316 ;   NM_001349319 ;   NM_001349321 ;   NM_001349322 ;   NM_001349323 ;   NM_001349324 ;   NM_001349325 ;   NM_001364885 ;   NM_003278 ;   NM_012157 ;   NM_015149 ;   NM_022744 ;   NM_025081 ;   NM_032442 ;   NR_038883 ;   NR_134559 ;   NR_146123 ;   NR_146126 ;   NR_146130 ;   NR_146131 ;   NR_146132 ;   NR_146133 ;   NR_146134 ;   NR_146135 ;