The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR156
  5. sor-miR156a

Accession: B62797154

Entry

ID: sor-miR156a
Alias: F1.K000057.A3D*
Sequence: UGACAGAAGAGAGUGAGCAC
Description: MIR156 putative
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Mirbase
Experimental status: Not yet

Homologs

miRBase Homologs

aly-miR156a-5p; aly-miR156b-5p; aly-miR156c-5p; aly-miR156d-5p; aly-miR156e-5p; aly-miR156f-5p; aof-miR156a; ata-miR156a-5p; ata-miR156b-5p; ata-miR156c-5p; ata-miR156d-5p; ata-miR156e-5p; ath-miR156a-5p; ath-miR156b-5p; ath-miR156c-5p; ath-miR156d-5p; ath-miR156e; ath-miR156f-5p; atr-miR156b; atr-miR156d; bdi-miR156b-5p; bdi-miR156c; bdi-miR156d-5p; bdi-miR156e-5p; bdi-miR156f-5p; bdi-miR156g-5p; bdi-miR156h-5p; bdi-miR156i-5p; bna-miR156d; bna-miR156e; bna-miR156f; bra-miR156a-5p; bra-miR156b-5p; bra-miR156c-5p; bra-miR156d-5p; bra-miR156e-5p; bra-miR156f-5p; bra-miR156g-5p; cas-miR156a; cas-miR156b-5p; cas-miR156c-5p; cas-miR156d-5p; cas-miR156e-5p; cas-miR156f-5p; cas-miR156k-5p; cca-miR156a; cme-miR156a; cme-miR156c; cme-miR156d; cme-miR156i; cpa-miR156a; cpa-miR156b; cpa-miR156c; cpa-miR156d; csi-miR156a-5p; csi-miR156b-5p; csi-miR156c-5p; ctr-miR156; dpr-miR156b; fve-miR156d; ghr-miR156a; ghr-miR156b; ghr-miR156d; gma-miR156a; gma-miR156h; gma-miR156u; gma-miR156v; gma-miR156w; gma-miR156x; gma-miR156y; han-miR156a; han-miR156b; har-miR156a; htu-miR156a; lus-miR156a; lus-miR156g; mdm-miR156a; mdm-miR156b; mdm-miR156c; mdm-miR156d; mdm-miR156e; mdm-miR156f; mdm-miR156g; mdm-miR156h; mdm-miR156i; mdm-miR156j; mdm-miR156k; mdm-miR156l; mdm-miR156m; mdm-miR156n; mdm-miR156o; mes-miR156a; mes-miR156b; mes-miR156c; mes-miR156d; mes-miR156e; mes-miR156f; mes-miR156g; mtr-miR156b-5p; mtr-miR156c-5p; mtr-miR156d-5p; mtr-miR156i-5p; nta-miR156a; nta-miR156b; nta-miR156c; nta-miR156d; nta-miR156e; osa-miR156a; osa-miR156b-5p; osa-miR156c-5p; osa-miR156d; osa-miR156e; osa-miR156f-5p; osa-miR156g-5p; osa-miR156h-5p; osa-miR156i; osa-miR156j-5p; pab-miR156a; pab-miR156l; ppe-miR156c; ppe-miR156d; ppe-miR156e; ppt-miR156a; ppt-miR156b; ppt-miR156c; ptc-miR156a; ptc-miR156b; ptc-miR156c; ptc-miR156d; ptc-miR156e; ptc-miR156f; sbi-miR156a; sbi-miR156b; sbi-miR156c; sbi-miR156f; sbi-miR156g; sbi-miR156h; sbi-miR156i; sly-miR156d-5p; sof-miR156; stu-miR156e; stu-miR156g-5p; stu-miR156h-5p; stu-miR156i-5p; stu-miR156j-5p; stu-miR156k-5p; tcc-miR156b; tcc-miR156c; tcc-miR156d; tcc-miR156g; vca-miR156a-5p; vun-miR156a; vvi-miR156b; vvi-miR156c; vvi-miR156d; zma-miR156a-5p; zma-miR156b-5p; zma-miR156c; zma-miR156d-5p; zma-miR156e-5p; zma-miR156f-5p; zma-miR156g-5p; zma-miR156h-5p; zma-miR156i-5p; zma-miR156l-5p;

Bencao Homologs

Bjl-miR156a; aha-miR156a; ala-miR156; bca-miR156; cas-miR156a; cco-miR156a; cit-miR156a; cmd-miR156a; csp-miR156a; dst-miR156a; fmu-miR156; gpe-miR156a; hcr-miR156a; ini-miR156; nca-miR156a; nnu-miR156a; nte-miR156a; pfr-miR156a; por-miR156a; pvl-miR156a; sba-miR156a; sch-miR156a; sdi-miR156a; sor-miR156a; sto-miR156a; tmo-miR156a;

Rfam Alignments

>> mir-156  mir-156 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.093   15.3   0.0  cm        2       21 ~~           1          20 + ~~ 1.00 5'&3' 0.50
                                                                ????????????????????       NC
                                                           ~~~~~<<<<<<<<<<<<<<<<<<<<~~~~~~ CS
                                                mir-156  1 <[1]*uGACaGaaGAGaGUGAGCAC*[67]> 88
                                                                UGACAGAAGAGAGUGAGCAC
                                            tmo-miR156a  1 <[0]*UGACAGAAGAGAGUGAGCAC*[ 0]> 20
                                                           .....********************...... PP

Targets

Predicted by TargetFinder

NM_000085 ;   NM_001012414 ;   NM_001042704 ;   NM_001080414 ;   NM_001130924 ;   NM_001163771 ;   NM_001165945 ;   NM_001167580 ;   NM_001172638 ;   NM_001178097 ;   NM_001257139 ;   NM_001318915 ;   NM_001323031 ;   NM_001323032 ;   NM_001323033 ;   NM_001323034 ;   NM_001323036 ;   NM_001323037 ;   NM_001323038 ;   NM_001323039 ;   NM_001323040 ;   NM_001348091 ;   NM_001447 ;   NM_002338 ;   NM_003235 ;   NM_004070 ;   NM_014848 ;   NM_016946 ;   NM_018958 ;   NM_020546 ;   NM_024743 ;   NM_033121 ;   NM_080679 ;   NM_080680 ;   NM_080681 ;   NM_152283 ;   NR_024010 ;   NR_026716 ;   NR_027102 ;   NR_104095 ;   NR_104096 ;   NR_104097 ;   NR_136268 ;   NR_152730 ;  

Predicted by TAPIR

NM_000477 ;   NM_001042704 ;   NM_001163771 ;   NM_001167580 ;   NM_001178097 ;   NM_001206747 ;   NM_001206748 ;   NM_001233 ;   NM_001257139 ;   NM_001323031 ;   NM_001323032 ;   NM_001323033 ;   NM_001323034 ;   NM_001323036 ;   NM_001323037 ;   NM_001323038 ;   NM_001323039 ;   NM_001323040 ;   NM_001348091 ;   NM_003235 ;   NM_004070 ;   NM_004657 ;   NM_005199 ;   NM_014848 ;   NM_016946 ;   NM_017734 ;   NM_018958 ;   NM_020546 ;   NM_032233 ;   NM_080679 ;   NM_080680 ;   NM_080681 ;   NM_198212 ;   NM_199123 ;   NR_002216 ;