The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR146
  5. sor-miR146r

Accession: B63169272

Entry

ID: sor-miR146r
Alias: F75630.O000008.A11
Sequence: UGAGAACUGAAUUCCAUGGGUUGA
Description: microRNA mir-146 predicted
Species: 豨莶  Species latin name: Sigesbeckia orientalis
TCM Name: Xixiancao(豨莶草)  
TCM Resource (Sample number): 豨莶草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR146v; sor-miR146r;

Rfam Alignments

>> mir-146  microRNA mir-146
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00038   23.3   0.0  cm       16       39 ~~           1          24 + ~~ 0.99 5'&3' 0.42
                                 ????????       ????          NC
                         ~~~~~~--<<<<<<<<-------<<<<___~~~~~~ CS
              mir-146  1 <[15]*UGAGAACUGAAUUCCAUgGgcUGU*[51]> 90
                               UGAGAACUGAAUUCCAUGGG UG
          sor-miR146r  1 <[ 0]*UGAGAACUGAAUUCCAUGGGUUGA*[ 0]> 24
                         ......***********************9...... PP

Targets

Predicted by TargetFinder

NM_001354431 ;   NM_001354432 ;   NM_001365596 ;   NM_001365597 ;   NM_001365598 ;   NM_001365599 ;   NM_001365600 ;   NM_001365601 ;   NM_001365602 ;   NM_001365603 ;   NM_001365604 ;   NM_001365605 ;   NM_017892 ;  

Predicted by TAPIR