The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. nnu-miR27b

Accession: B48729349

Entry

ID: nnu-miR27b
Alias: F3421.M000069.A11
Sequence: UUCACAGUGGCUAAGUUCUGCU
Description: microRNA mir-27 predicted
Species: 莲  Species latin name: Nelumbo nucifera
TCM Name: Lianzi(莲子)   Lianzixin(莲子心)   Lianfang(莲房)   Liaxu(莲须)   Heye(荷叶)   Oujie(藕节)  
TCM Resource (Sample number): 莲房(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27d; asc-miR27c; bca-miR27d; bch-miR27e; bpi-miR27c; cci-miR27c; cfe-miR27f; cit-miR27ap; cmd-miR27ag; fmu-miR27c; hcr-miR27ai; ljp-miR27c; nnu-miR27b; poe-miR27ah; ppr-miR27c; pvl-miR27d; sgi-miR27c; sor-miR27aj; tch-miR27c; tki-miR27c; vph-miR27b; zof-miR27c;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00055   21.9   0.0  cm       56       77 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                               ?????  ???????????          NC
                         ~~~~~~>>>>>-->>>>>>>>>>>::::~~~~~ CS
               mir-27  1 <[55]*uUCACAGuGGCUAAGuuCuGCu*[6]> 83
                               UUCACAGUGGCUAAGUUCUGCU
           zof-miR27c  1 <[ 0]*UUCACAGUGGCUAAGUUCUGCU*[0]> 22
                         ......**********************..... PP

Targets

Predicted by TargetFinder

NM_001204416 ;   NM_001204419 ;   NM_001204420 ;   NM_001204423 ;   NM_001204424 ;   NM_001370270 ;   NM_001370271 ;   NM_001370272 ;   NM_001370273 ;   NM_001370274 ;   NM_001370275 ;   NM_001370276 ;   NM_001370277 ;   NM_001370278 ;   NM_001370279 ;   NM_001370280 ;   NM_001370282 ;   NM_001370283 ;   NM_001370284 ;   NM_001370286 ;   NM_001370287 ;   NM_001370288 ;   NM_001370289 ;   NM_001370290 ;   NM_001370291 ;   NM_001370292 ;   NM_001370293 ;   NM_001370294 ;   NM_004296 ;   NM_022055 ;   NR_104614 ;   NR_104615 ;   NR_104664 ;   NR_135235 ;  

Predicted by TAPIR

NM_001005291 ;   NM_001204416 ;   NM_001204419 ;   NM_001204420 ;   NM_001204423 ;   NM_001204424 ;   NM_001278631 ;   NM_001321096 ;   NM_001351019 ;   NM_001370270 ;   NM_001370271 ;   NM_001370272 ;   NM_001370273 ;   NM_001370274 ;   NM_001370275 ;   NM_001370276 ;   NM_001370277 ;   NM_001370278 ;   NM_001370279 ;   NM_001370280 ;   NM_001370282 ;   NM_001370283 ;   NM_001370284 ;   NM_001370286 ;   NM_001370287 ;   NM_001370288 ;   NM_001370289 ;   NM_001370290 ;   NM_001370291 ;   NM_001370292 ;   NM_001370293 ;   NM_001370294 ;   NM_004176 ;   NM_004296 ;   NM_005828 ;   NM_021916 ;   NM_022055 ;   NR_104614 ;   NR_104615 ;   NR_135235 ;