The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. nnu-miR1b

Accession: B48480442

Entry

ID: nnu-miR1b
Alias: F574.M000060.B25
Sequence: UGGAAUGUAAAGAAGUAUGGAG
Description: mir-1 microRNA precursor family predicted,partially
Species: 莲  Species latin name: Nelumbo nucifera
TCM Name: Lianzi(莲子)   Lianzixin(莲子心)   Lianfang(莲房)   Liaxu(莲须)   Heye(荷叶)   Oujie(藕节)  
TCM Resource (Sample number): 莲房(1) 莲须(1) 荷叶(1) 藕节(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Yes

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR1b; Bjl-miR1b; Bsr-miR1b; Bswzz-miR1c; aar-miR1b; abs-miR1b; acr-miR1c; act-miR1a; aer-miR1b; aeu-miR1b; aha-miR1b; aku-miR1; apl-miR1b; ath-miR1; ave-miR1; bca-miR1b; bhi-miR1a; cab-miR1b; cba-miR1b; cci-miR1b; ccm-miR1; cco-miR1a; ccs-miR1; cfe-miR1a; che-miR1b; cit-miR1ad; clo-miR1a; cma-miR1b; cmd-miR1ad; cmo-miR1a; cof-miR1a; cor-miR1b; cpe-miR1; cph-miR1a; cri-miR1b; cso-miR1a; csp-miR1b; csu-miR1c; efo-miR1; ehu-miR1a; fmu-miR1b; fth-miR1a; gbi-miR1b; gel-miR1a; gja-miR1b; hcr-miR1ab; hof-miR1a; hvu-miR1b; ija-miR1b; ini-miR1a; kga-miR1a; lba-miR1a; lcr-miR1a; lfo-miR1b; lgr-miR1b; ljc-miR1b; lji-miR1b; ljp-miR1b; llc-miR1b; llu-miR1b; mca-miR1; mda-miR1; nca-miR1b; nja-miR1b; nnu-miR1b; nsc-miR1b; ofi-miR1b; pas-miR1b; pch-miR1a; pcn-miR1; pfr-miR1a; pgi-miR1a; poe-miR1ad; por-miR1b; ppr-miR1a; pvl-miR1a; rcd-miR1a; rch-miR1b; rcr-miR1; rja-miR1; rte-miR1a; run-miR1a; sad-miR1b; sar-miR1b; sba-miR1b; sch-miR1b; sdi-miR1b; sgl-miR1b; sjp-miR1; sor-miR1ad; spa-miR1b; spo-miR1d; sse-miR1a; tch-miR1ac; tci-miR1b; tfa-miR1b; tki-miR1b; tmo-miR1b; twi-miR1a; vph-miR1a; vtr-miR1c; zof-miR1b;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0057   20.1   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.36
                                                                  ??? ??????????????????      NC
                                                            ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                                                   mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                                                                  UGGAAUGUAAAGAAGUAUG AG
                                               zof-miR1b  1 <[ 0]*UGGAAUGUAAAGAAGUAUGGAG*[0]> 22
                                                            ......**********************..... PP

Targets

Predicted by TargetFinder

NM_000892 ;   NM_001080412 ;   NM_001145373 ;   NM_001201477 ;   NM_001318394 ;   NM_001318396 ;   NM_001350099 ;   NM_001350100 ;   NM_018092 ;   NM_021637 ;   NM_213589 ;   NR_146713 ;  

Predicted by TAPIR

NM_001080412 ;   NM_001350099 ;   NM_001350100 ;   NM_014586 ;   NM_021637 ;   NM_213589 ;   NR_146713 ;