The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. nnu-miR1a

Accession: B48480441

Entry

ID: nnu-miR1a
Alias: F574.L000022.A25
Sequence: UGGAAUGUAAAGAAGUAUGGA
Description: mir-1 microRNA precursor family predicted,partially
Species: 莲  Species latin name: Nelumbo nucifera
TCM Name: Lianzi(莲子)   Lianzixin(莲子心)   Lianfang(莲房)   Liaxu(莲须)   Heye(荷叶)   Oujie(藕节)  
TCM Resource (Sample number): 莲须(1) 藕节(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR1a; Bjl-miR1a; Bsr-miR1a; Bswzz-miR1a; aar-miR1a; abs-miR1a; acr-miR1a; aer-miR1a; aeu-miR1a; aha-miR1a; apl-miR1a; bca-miR1a; cab-miR1a; cba-miR1a; cci-miR1a; cde-miR1a; che-miR1a; cit-miR1aa; cma-miR1a; cmd-miR1aa; cor-miR1a; cri-miR1a; csp-miR1a; csu-miR1a; fmu-miR1a; gbi-miR1a; gja-miR1a; hvu-miR1a; ija-miR1a; lfo-miR1a; lgr-miR1a; ljc-miR1a; lji-miR1a; llc-miR1a; llu-miR1a; nca-miR1a; nja-miR1a; nnu-miR1a; nsc-miR1a; ofi-miR1a; pas-miR1a; poe-miR1aa; por-miR1a; rch-miR1a; sad-miR1a; sar-miR1a; sba-miR1a; sch-miR1a; sdi-miR1a; sgl-miR1a; sor-miR1aa; spa-miR1a; spo-miR1a; tch-miR1aa; tci-miR1a; tfa-miR1a; tki-miR1a; tmo-miR1a; zof-miR1a;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0069   19.7   0.0  cm       49       69 ~~           1          21 + ~~ 1.00 5'&3' 0.33
                                                                ??? ?????????????????      NC
                                                          ~~~~~~>>>->>>>>>>>>>>>>>>>>~~~~~ CS
                                                 mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGua*[8]> 77
                                                                UGGAAUGUAAAGAAGUAUG A
                                             zof-miR1a  1 <[ 0]*UGGAAUGUAAAGAAGUAUGGA*[0]> 21
                                                          ......*********************..... PP

Targets

Predicted by TargetFinder

NM_000721 ;   NM_001080412 ;   NM_001145373 ;   NM_001201477 ;   NM_001205293 ;   NM_001205294 ;   NM_001350099 ;   NM_001350100 ;   NM_005562 ;   NM_006789 ;   NM_018092 ;   NM_021637 ;   NM_213589 ;   NR_146713 ;  

Predicted by TAPIR

NM_001080412 ;   NM_001161560 ;   NM_001161561 ;   NM_001161562 ;   NM_001161563 ;   NM_001161564 ;   NM_001161565 ;   NM_001161566 ;   NM_001166018 ;   NM_001350099 ;   NM_001350100 ;   NM_001370959 ;   NM_007252 ;   NM_014586 ;   NM_015028 ;   NM_213589 ;   NR_146713 ;