The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. nnu-miR166ap

Accession: B48598760

Entry

ID: nnu-miR166ap
Alias: F1149.L000008.A3D*
Sequence: UCGGACCAGGCUUCAUCCCCC
Description: MIR166 putative
Species: 莲  Species latin name: Nelumbo nucifera
TCM Name: Lianzi(莲子)   Lianzixin(莲子心)   Lianfang(莲房)   Liaxu(莲须)   Heye(荷叶)   Oujie(藕节)  
TCM Resource (Sample number): 莲房(1) 荷叶(1) 藕节(1) 莲(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aof-miR166c; ath-miR165a-3p; ath-miR165b; bna-miR166f; cas-miR165a; lus-miR166b;

Bencao Homologs

Bjl-miR166l; bpi-miR166g; cas-miR166j; cco-miR166au; ccs-miR166as; cmd-miR166n; cmj-miR166j; cof-miR166av; epr-miR166av; fsu-miR166p; gbi-miR166av; hcr-miR166bc; mca-miR166as; nnu-miR166ap; pfr-miR166ba; pvl-miR166bb; rcr-miR166n; sba-miR166j; sch-miR166p; sdi-miR166k; sgi-miR166b; sto-miR166n;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00039   21.3   0.0  cm      101      121 ~~           1          21 + ~~ 1.00 5'&3' 0.67
                                                              ???  ??????  ????????      NC
                                                       ~~~~~~~>>>-->>>>>>-->>>>>>>>~~~~~ CS
                                           mir-166   1 <[100]*UCGGACCAGGCUUCAUUCCcC*[5]> 126
                                                              UCGGACCAGGCUUCAU CCCC
                                       sto-miR166n   1 <[  0]*UCGGACCAGGCUUCAUCCCCC*[0]> 21
                                                       .......*********************..... PP

Targets

Predicted by TargetFinder

NM_015221 ;  

Predicted by TAPIR

NM_001291879 ;   NM_001517 ;   NM_015221 ;   NM_017811 ;   NM_175871 ;