The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR162
  5. nnu-miR162

Accession: B48791871

Entry

ID: nnu-miR162
Alias: F6235.L000013.A3D*
Sequence: UCGAUAAACCUCUGCAUCCGG
Description: MIR162 putative
Species: 莲  Species latin name: Nelumbo nucifera
TCM Name: Lianzi(莲子)   Lianzixin(莲子心)   Lianfang(莲房)   Liaxu(莲须)   Heye(荷叶)   Oujie(藕节)  
TCM Resource (Sample number): 莲房(1) 莲须(1) 荷叶(1) 藕节(1) 莲(1)
Predicted by Mirnovo: -
Evidence support: Mirbase
Experimental status: Not yet

Homologs

miRBase Homologs

bdi-miR162; pab-miR162a;

Bencao Homologs

Bjl-miR162b; Bswzz-miR162b; aha-miR162; aox-miR162; bhi-miR162b; ccs-miR162; efo-miR162; gbi-miR162c; hcr-miR162; lln-miR162; nnu-miR162; sad-miR162; sgl-miR162; sse-miR162;

Rfam Alignments

>> MIR162_2  microRNA MIR162_2
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.082   15.7   0.0  cm       71       91 ~.           1          21 + ~] 0.98    5' 0.52
                                                             ????? ???? ???? ????? NC
                                                       ~~~~~~>>>>>->>>>->>>>->>>>> CS
                                           MIR162_2  3 <[68]*UCGAUAAaCCUCUGCAuCCAG 91
                                                             UCGAUAAACCUCUGCAUCC G
                                         sse-miR162  1 <[ 0]*UCGAUAAACCUCUGCAUCCGG 21
                                                       ......*******************98 PP

Targets

Predicted by TargetFinder

NM_017514 ;  

Predicted by TAPIR

NM_014924 ;   NM_017514 ;