The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. lpu-miR159ch

Accession: B43958560

Entry

ID: lpu-miR159ch
Alias: F27972.L000101.A25*
Sequence: UGGACUGAAGGGAGCUCCCUC
Description: microRNA MIR159 predicted
Species: 扁豆  Species latin name: Lablab purpureus
TCM Name: Baibiandou(白扁豆)  
TCM Resource (Sample number): 白扁豆(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR159o; cco-miR159bn; cit-miR159j; cmd-miR159n; csp-miR159ap; lpu-miR159ch; psu-miR159aw; pvl-miR159av; sgl-miR159p;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0026   18.4   0.0  cm      166      185 ~.           1          20 + ~. 1.00    5' 0.60
                                                                     ???????  ????????    NC
                                                              ~~~~~~~>>>>>>>-->>>>>>>>::: CS
                                                   MIR159  13 <[153]*UGGAcuGAAGGGAGCUCCuu 185
                                                                     UGGACUGAAGGGAGCUCC+U
                                              sgl-miR159p   1 <[  0]*UGGACUGAAGGGAGCUCCCU 20
                                                              .......******************** PP

Targets

Predicted by TargetFinder

NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_001319035 ;   NM_001321920 ;   NM_001321922 ;   NM_001321923 ;   NM_007110 ;   NM_014906 ;   NM_020447 ;   NM_173626 ;   NR_048561 ;   NR_135841 ;   NR_135842 ;   NR_135843 ;   NR_135844 ;   NR_135845 ;   NR_135846 ;   NR_135847 ;   NR_135848 ;   NR_135849 ;   NR_135850 ;   NR_135851 ;   NR_135852 ;   NR_135853 ;   NR_135854 ;  

Predicted by TAPIR

NM_001166347 ;   NM_001166348 ;   NM_001166349 ;   NM_001319035 ;   NM_001321920 ;   NM_001321922 ;   NM_001321923 ;   NM_007110 ;   NM_020447 ;   NM_173626 ;   NR_121582 ;   NR_135841 ;   NR_135842 ;   NR_135843 ;   NR_135844 ;   NR_135845 ;   NR_135846 ;   NR_135847 ;   NR_135848 ;   NR_135849 ;   NR_135850 ;   NR_135851 ;   NR_135852 ;   NR_135853 ;   NR_135854 ;