The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR156
  5. lpu-miR156

Accession: B43950092

Entry

ID: lpu-miR156
Alias: F6850.K000127.A25
Sequence: UUGACAGAAGAGAGUGAGCA
Description: mir-156 microRNA precursor predicted,partially
Species: 扁豆  Species latin name: Lablab purpureus
TCM Name: Baibiandou(白扁豆)  
TCM Resource (Sample number): 白扁豆(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

aha-miR156c; aox-miR156b; apl-miR156e; bmj-miR156; cco-miR156d; cof-miR156f; csp-miR156c; dst-miR156c; lpu-miR156; por-miR156e; sto-miR156k; tci-miR156;

Rfam Alignments

>> mir-156  mir-156 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0091   19.0   0.0  cm        1       20 [~           1          20 + [~ 1.00    3' 0.45
                                                           ????????????????????       NC
                                                           <<<<<<<<<<<<<<<<<<<<~~~~~~ CS
                                                mir-156  1 guGACaGaaGAGaGUGAGCA*[68]> 88
                                                            UGACAGAAGAGAGUGAGCA
                                             tci-miR156  1 UUGACAGAAGAGAGUGAGCA*[ 0]> 20
                                                           ********************...... PP

Targets

Predicted by TargetFinder

NM_000085 ;   NM_000477 ;   NM_001012414 ;   NM_001018050 ;   NM_001018052 ;   NM_001042704 ;   NM_001079533 ;   NM_001079534 ;   NM_001079535 ;   NM_001105214 ;   NM_001130924 ;   NM_001163771 ;   NM_001165945 ;   NM_001167580 ;   NM_001257139 ;   NM_001261832 ;   NM_001270483 ;   NM_001278359 ;   NM_001278360 ;   NM_001278361 ;   NM_001278362 ;   NM_001278363 ;   NM_001282272 ;   NM_001282884 ;   NM_001282885 ;   NM_001286633 ;   NM_001288819 ;   NM_001288820 ;   NM_001304478 ;   NM_001318915 ;   NM_001319242 ;   NM_001321547 ;   NM_001321548 ;   NM_001321550 ;   NM_001323031 ;   NM_001323032 ;   NM_001323033 ;   NM_001323034 ;   NM_001323036 ;   NM_001323037 ;   NM_001323038 ;   NM_001323039 ;   NM_001323040 ;   NM_001345921 ;   NM_001345922 ;   NM_001349105 ;   NM_001349106 ;   NM_001349107 ;   NM_001349108 ;   NM_001349111 ;   NM_001365240 ;   NM_001365241 ;   NM_001365242 ;   NM_001365243 ;   NM_001365244 ;   NM_001365245 ;   NM_001365246 ;   NM_001365247 ;   NM_001365248 ;   NM_001365249 ;   NM_001365250 ;   NM_001463 ;   NM_002338 ;   NM_003312 ;   NM_003867 ;   NM_004070 ;   NM_004674 ;   NM_014848 ;   NM_016218 ;   NM_018128 ;   NM_020546 ;   NM_022462 ;   NM_030594 ;   NM_033121 ;   NM_080679 ;   NM_080680 ;   NM_080681 ;   NM_138338 ;   NM_152387 ;   NM_152794 ;   NM_152795 ;   NM_152996 ;   NM_178815 ;   NM_205852 ;   NR_002216 ;   NR_120621 ;   NR_144315 ;   NR_146056 ;   NR_146569 ;   NR_149116 ;  

Predicted by TAPIR

NM_000085 ;   NM_000477 ;   NM_001015045 ;   NM_001042539 ;   NM_001042704 ;   NM_001079533 ;   NM_001079534 ;   NM_001079535 ;   NM_001099686 ;   NM_001105214 ;   NM_001159699 ;   NM_001159700 ;   NM_001159701 ;   NM_001159702 ;   NM_001159703 ;   NM_001163771 ;   NM_001165945 ;   NM_001166242 ;   NM_001167580 ;   NM_001167819 ;   NM_001206747 ;   NM_001206748 ;   NM_001233 ;   NM_001257139 ;   NM_001261832 ;   NM_001265579 ;   NM_001265580 ;   NM_001270483 ;   NM_001276275 ;   NM_001276276 ;   NM_001278359 ;   NM_001278360 ;   NM_001278361 ;   NM_001278362 ;   NM_001278363 ;   NM_001282272 ;   NM_001282659 ;   NM_001286633 ;   NM_001288819 ;   NM_001288820 ;   NM_001293298 ;   NM_001293304 ;   NM_001304478 ;   NM_001318915 ;   NM_001323031 ;   NM_001323032 ;   NM_001323033 ;   NM_001323034 ;   NM_001323036 ;   NM_001323037 ;   NM_001323038 ;   NM_001323039 ;   NM_001323040 ;   NM_001330208 ;   NM_001330659 ;   NM_001348148 ;   NM_001349105 ;   NM_001349106 ;   NM_001349107 ;   NM_001349108 ;   NM_001349111 ;   NM_001365240 ;   NM_001365241 ;   NM_001365242 ;   NM_001365243 ;   NM_001365244 ;   NM_001365245 ;   NM_001365246 ;   NM_001365247 ;   NM_001365248 ;   NM_001365249 ;   NM_001365250 ;   NM_001369326 ;   NM_001369327 ;   NM_001369328 ;   NM_001369329 ;   NM_001369330 ;   NM_001369331 ;   NM_001372091 ;   NM_001372092 ;   NM_001372093 ;   NM_001372094 ;   NM_001372095 ;   NM_001372096 ;   NM_001372097 ;   NM_001372098 ;   NM_001372099 ;   NM_001372100 ;   NM_001372101 ;   NM_001372102 ;   NM_001372103 ;   NM_001449 ;   NM_002338 ;   NM_002383 ;   NM_003235 ;   NM_003312 ;   NM_003867 ;   NM_004070 ;   NM_004674 ;   NM_014848 ;   NM_014883 ;   NM_017734 ;   NM_017944 ;   NM_018689 ;   NM_020546 ;   NM_022052 ;   NM_022053 ;   NM_022462 ;   NM_030594 ;   NM_033121 ;   NM_080679 ;   NM_080680 ;   NM_080681 ;   NM_138700 ;   NM_152794 ;   NM_152795 ;   NM_152996 ;   NM_173793 ;   NM_178815 ;   NM_198212 ;   NR_002216 ;   NR_027621 ;   NR_027622 ;   NR_074080 ;   NR_146056 ;   NR_146569 ;   NR_159736 ;