The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. llu-miR1k

Accession: B43500292

Entry

ID: llu-miR1k
Alias: F574.N000225.A11
Sequence: UGGAAUGUAAAGAAGUAUGUAUA
Description: mir-1 microRNA precursor family predicted,partially
Species: 女贞  Species latin name: Ligustrum lucidum
TCM Name: NVzhenzi(女贞子)  
TCM Resource (Sample number): 女贞子(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

asc-miR1i; bca-miR1j; bhi-miR1f; bpi-miR1l; cci-miR1i; cfe-miR1l; cit-miR1az; cmd-miR1ar; cmi-miR1i; fmu-miR1i; gel-miR1g; hcr-miR1ap; lgr-miR1j; llu-miR1k; poe-miR1aw; pvl-miR1i; sch-miR1j; sor-miR1aw; tch-miR1aq; zof-miR1n;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0039   20.8   0.0  cm       49       70 ~.           1          22 + ~. 1.00    5' 0.27
                              ??? ?????????????????? NC
                        ~~~~~~>>>->>>>>>>>>>>>>>>>>> CS
               mir-1  8 <[41]*UGGAAUgUAAaGAAGuAUGuag 70
                              UGGAAUGUAAAGAAGUAUGUA
           zof-miR1n  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUAU 22
                        ......********************** PP

Targets

Predicted by TargetFinder

NM_001163391 ;   NM_001368124 ;   NM_005562 ;   NM_016255 ;  

Predicted by TAPIR

NM_005562 ;   NM_016255 ;