The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. ljp-miR30ae

Accession: B42867165

Entry

ID: ljp-miR30ae
Alias: F3769.N000112.A11
Sequence: UGUAAACAUCCCCGACUGGAAGA
Description: mir-30 microRNA precursor predicted,partially
Species: 石松  Species latin name: Lycopodium japonicum
TCM Name: Shenjincao(伸筋草)  
TCM Resource (Sample number): 伸筋草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30am; asc-miR30ah; bch-miR30ah; cba-miR30e; cci-miR30ae; cfe-miR30ai; cit-miR30bs; cmd-miR30aq; cof-miR30f; epr-miR30d; hcr-miR30an; ljp-miR30ae; pfr-miR30d; poe-miR30aw; sar-miR30e; sdf-miR30g; sln-miR30e; sor-miR30bp; tfa-miR30d; tki-miR30ai; zof-miR30ah;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0031   21.5   0.0  cm        1       23 [~           1          23 + [~ 0.99    3' 0.48
                          ??????????  ??????????       NC
                         :<<<<<<<<<<--<<<<<<<<<<~~~~~~ CS
               mir-30  1 UGuAAACAUCcUcGACuGgaAGC*[37]> 60
                         UGUAAACAUCC+CGACUGGAAG
          zof-miR30ah  1 UGUAAACAUCCCCGACUGGAAGA*[ 0]> 23
                         **********************9...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR