The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. ljp-miR27h

Accession: B42917138

Entry

ID: ljp-miR27h
Alias: F15151.L000072.A25
Sequence: UUCACAGUGGCUAAGUUCCGU
Description: microRNA mir-27 predicted
Species: 石松  Species latin name: Lycopodium japonicum
TCM Name: Shenjincao(伸筋草)  
TCM Resource (Sample number): 伸筋草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27m; Bswzz-miR27d; acr-miR27e; asc-miR27i; bca-miR27l; bhi-miR27d; cci-miR27g; cfe-miR27m; cit-miR27bn; cmd-miR27at; esn-miR27c; fmu-miR27g; hcr-miR27ar; ljp-miR27h; poe-miR27au; psu-miR27d; sgi-miR27g; sor-miR27bl; tch-miR27g; zof-miR27j;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0015   20.3   0.0  cm       56       75 ~.           1          20 + ~. 1.00    5' 0.50
                                                                  ?????  ???????????   NC
                                                            ~~~~~~>>>>>-->>>>>>>>>>>:: CS
                                                  mir-27 15 <[41]*uUCACAGuGGCUAAGuuCuG 75
                                                                  UUCACAGUGGCUAAGUUC+G
                                              zof-miR27j  1 <[ 0]*UUCACAGUGGCUAAGUUCCG 20
                                                            ......******************** PP

Targets

Predicted by TargetFinder

NM_000213 ;   NM_001005619 ;   NM_001005731 ;   NM_001131019 ;   NM_001242376 ;   NM_001278196 ;   NM_001321123 ;   NM_001363846 ;   NM_002055 ;   NM_006352 ;   NM_205768 ;  

Predicted by TAPIR

NM_001131019 ;   NM_001242376 ;   NM_001278196 ;   NM_001363846 ;   NM_002055 ;   NM_004466 ;   NM_006352 ;   NM_021916 ;   NM_205768 ;   NR_003503 ;