The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. ljp-miR27g

Accession: B42917135

Entry

ID: ljp-miR27g
Alias: F15151.K000048.A11
Sequence: UUCACAGUGGCUAAGUUCUA
Description: microRNA mir-27 predicted
Species: 石松  Species latin name: Lycopodium japonicum
TCM Name: Shenjincao(伸筋草)  
TCM Resource (Sample number): 伸筋草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27k; asc-miR27h; bca-miR27k; cfe-miR27l; cit-miR27bl; cmd-miR27ar; cof-miR27g; fmu-miR27f; ljp-miR27g; poe-miR27at; sor-miR27bj; zof-miR27i;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0037   18.8   0.0  cm       56       74 ~.           1          19 + ~. 1.00    5' 0.42
                              ?????  ???????????  NC
                        ~~~~~~>>>>>-->>>>>>>>>>>: CS
              mir-27 15 <[41]*uUCACAGuGGCUAAGuuCu 74
                              UUCACAGUGGCUAAGUUCU
          zof-miR27i  1 <[ 0]*UUCACAGUGGCUAAGUUCU 19
                        ......******************* PP

Targets

Predicted by TargetFinder

NM_001131019 ;   NM_001242376 ;   NM_001278196 ;   NM_001278631 ;   NM_001363846 ;   NM_002055 ;   NM_003566 ;   NM_004282 ;   NM_004370 ;   NM_004466 ;   NM_006352 ;   NM_021916 ;   NM_080645 ;   NM_080677 ;   NM_205768 ;   NR_104664 ;  

Predicted by TAPIR

NM_001131019 ;   NM_001134337 ;   NM_001134338 ;   NM_001160130 ;   NM_001160132 ;   NM_001160133 ;   NM_001160134 ;   NM_001242376 ;   NM_001278196 ;   NM_001278631 ;   NM_001321749 ;   NM_001328637 ;   NM_001351269 ;   NM_001363846 ;   NM_002055 ;   NM_004370 ;   NM_006352 ;   NM_007219 ;   NM_016040 ;   NM_019842 ;   NM_021916 ;   NM_080645 ;   NM_080677 ;   NM_145238 ;   NM_178527 ;   NM_205768 ;   NR_003503 ;   NR_026961 ;