The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR24
  5. ljp-miR24e

Accession: B42851406

Entry

ID: ljp-miR24e
Alias: F2534.M001072.A25*
Sequence: UGGCUCAGUUCAGCAGGAACAG
Description: mir-24 microRNA precursor family predicted,partially
Species: 石松  Species latin name: Lycopodium japonicum
TCM Name: Shenjincao(伸筋草)  
TCM Resource (Sample number): 伸筋草(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR24i; Bswzz-miR24b; acr-miR24c; asc-miR24f; bca-miR24e; bch-miR24g; bhi-miR24c; cci-miR24c; cfe-miR24e; cit-miR24ax; cmd-miR24j; cof-miR24d; epr-miR24a; esn-miR24d; fmu-miR24d; gel-miR24a; hcr-miR24l; kga-miR24b; lba-miR24b; ljn-miR24; ljp-miR24e; pfr-miR24c; poe-miR24l; ppr-miR24c; pvl-miR24b; sbc-miR24a; sch-miR24b; sdf-miR24c; sgi-miR24c; sor-miR24av; tch-miR24b; tki-miR24d; vph-miR24g; zof-miR24e;

Rfam Alignments

>> mir-24  mir-24 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   5.1e-05   24.2   0.0  cm       44       65 ~~           1          22 + ~~ 1.00 5'&3' 0.55
                                                                  ????????? ???    ?      NC
                                                        ~~~~~~____>>>>>>>>>->>>---->~~~~~ CS
                                              mir-24  1 <[43]*UGGCUCAGuUCAGCAGGAACAG*[3]> 68
                                                              UGGCUCAGUUCAGCAGGAACAG
                                          zof-miR24e  1 <[ 0]*UGGCUCAGUUCAGCAGGAACAG*[0]> 22
                                                        ......**********************..... PP

Targets

Predicted by TargetFinder

NM_001144026 ;   NM_001144027 ;   NM_001144028 ;   NM_001322117 ;   NM_001322118 ;   NM_001322119 ;   NM_014434 ;   NR_036109 ;   NR_134503 ;   NR_157588 ;  

Predicted by TAPIR

NM_001144026 ;   NM_001144027 ;   NM_001144028 ;   NM_001199563 ;   NM_001322117 ;   NM_001322118 ;   NM_001322119 ;   NM_007073 ;   NM_014434 ;   NM_147147 ;   NR_036109 ;   NR_134503 ;   NR_157588 ;   NR_158224 ;