The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR9
  5. ljc-miR9d

Accession: B41448326

Entry

ID: ljc-miR9d
Alias: F28644.N000036.A25
Sequence: UCUUUGGUUAUCUAGCUGUAUGU
Description: mir-9/mir-79 microRNA precursor family predicted,partially
Species: 海金沙  Species latin name: Lygodium japonicum
TCM Name: Haijinsha(海金沙)  
TCM Resource (Sample number): 海金沙(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR9g; cfe-miR9f; cmd-miR9g; cof-miR9e; fsu-miR9d; hcr-miR9c; lba-miR9e; ljc-miR9d; ljo-miR9d; mal-miR9c; pfr-miR9d; ppr-miR9d; pvl-miR9e; sor-miR9e; tki-miR9h;

Rfam Alignments

>> mir-9  mir-9/mir-79 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0047   20.5   0.0  cm        2       24 ~~           1          23 + ~~ 0.99 5'&3' 0.35
                                                                ???????????????  ????       NC
                                                         ~~~~~::<<<<<<<<<<<<<<<--<<<<~~~~~~ CS
                                                mir-9  1 <[1]*UCUUuGGUuaucUAGCUGUAUGA*[38]> 62
                                                              UCUUUGGUUAUCUAGCUGUAUG
                                            tki-miR9h  1 <[0]*UCUUUGGUUAUCUAGCUGUAUGU*[ 0]> 23
                                                         .....**********************9...... PP

Targets

Predicted by TargetFinder

NM_001282932 ;  

Predicted by TAPIR

NM_001025579 ;   NM_001282932 ;   NM_001330129 ;   NM_001363507 ;   NM_001363509 ;   NM_030808 ;